New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4957609 = | 2 (0.030) | 88 (1.210) | 67/248 | NT | 97.8% | intergenic (‑47/+116) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein |
? | NC_002947 | 5222979 = | NA (NA) | intergenic (‑342/+37) | PP_4602/PP_4603 | AraC family transcriptional regulator/transposase |
GCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTT > NC_002947/5222945‑5223094 | gcgcccgcgcAGCTCGGAAGGGCTGGGTGAGCTCTTATCGAACAAAATGCAACCCCTTGTCTGATAAGCACTCGAGCGCCCACCAGTTGATACCCCTGCTTCGCGGCTTTGCGAAGCAAAGCCCGGATCTGCCGGGCTTGGCTTCAGGtg > 2:907637/7‑149 (MQ=0) | GCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTT > NC_002947/5222945‑5223094 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |