New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5201663	5 (0.070)	15 (0.280)	11/180	NT	75.9%	intergenic (‑101/‑79)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	= 5201684	6 (0.110)					intergenic (‑122/‑58)	PP_4582/PP_4583	membrane protein/putative Peptidase

GTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGT  >  NC_002947/5201543‑5201830                                                                                                                                              |                                                                                                                                                   gtgtAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcggg                                                                                                                                            >  2:1914881‑M2/1‑142 (MQ=255)                     ggTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccgg                                                                                                                        >  1:926840‑M2/1‑122 (MQ=255)                       ctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                                                                                                             >  1:1085027‑M1/63‑127 (MQ=255)                       ctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                                                                                                             <  2:1085027‑M1/65‑1 (MQ=255)                          tCGTGCGAGCCAGGCAAAGAGACGCCTATGATAACCCCACTTATTGCCTCCGACATTTTTTGCCTGTGCCGGCGTGGTGTCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAg                                                                                                                   <  1:425388/150‑1 (MQ=21)                             ggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGTGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCg                                                                                                                         >  2:1753972‑M1/57‑141 (MQ=255)                             ggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGTGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCg                                                                                                                         <  1:1753972‑M1/85‑1 (MQ=255)                                    cAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttaccc                                                                                                                                     >  1:1222495‑M2/1‑107 (MQ=255)                                    cAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttaccc                                                                                                                                     <  2:1222495‑M2/122‑16 (MQ=255)                                      aatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                                                                                                             >  1:1498564‑M1/48‑112 (MQ=255)                                      aatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                                                                                                             <  2:1498564‑M1/65‑1 (MQ=255)                                                                       tctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGaa                                                                                                                                >  1:1246901‑M1/15‑92 (MQ=255)                                                                       tctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGaa                                                                                                                                <  2:1246901‑M1/78‑1 (MQ=255)                                                                                           gtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgg                                                                                                                                             >  1:1896023‑M2/1‑52 (MQ=255)                                                                                           gtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgg                                                                                                                                             <  2:1896023‑M2/59‑8 (MQ=255)                                                                                                   ctctTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcatagg                                                                            >  2:104157‑M2/1‑44 (MQ=255)                                                                                                   ctctTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcatagg                                                                            <  1:104157‑M2/116‑73 (MQ=255)                                                                                                    TCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCtt                                                                                             <  2:430957‑M1/98‑1 (MQ=255)                                                                                                    TCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCtt                                                                                             >  1:430957‑M1/1‑98 (MQ=255)                                                                                                      TTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCaa                                                                                                     >  2:591444‑M1/1‑88 (MQ=255)                                                                                                      TTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCaa                                                                                                     <  1:591444‑M1/88‑1 (MQ=255)                                                                                                      TTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGAcc                                       <  1:902013‑M1/150‑1 (MQ=255)                                                                                                         GCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTAAACTGCTGTTACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAACCCGACCCGGCCACCGACCCGt                                    <  1:594283‑M1/150‑1 (MQ=255)                                                                                                           gggTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacaccatgaccgagaacg                                  <  1:1191237‑M2/150‑115 (MQ=255)                                                                                                             gTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacaccatgaccgagaacgac                                <  1:1418667‑M2/150‑117 (MQ=255)                                                                                                               AAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCt                              <  2:476936‑M1/150‑1 (MQ=255)                                                                                                                aaCCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggc                                                                                                                 >  1:1598579‑M2/1‑31 (MQ=255)                                                                                                                aaCCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggc                                                                                                                 <  2:1598579‑M2/66‑36 (MQ=255)                                                                                                                 ACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTgg                            <  1:1894899‑M1/150‑1 (MQ=255)                                                                                                                 ACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTgg                            <  2:1604454‑M1/150‑1 (MQ=255)                                                                                                                  cccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaccactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacacc                                               <  1:1762958‑M2/130‑102 (MQ=255)                                                                                                                  cccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaccactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacacc                                               >  2:1762958‑M2/1‑29 (MQ=255)                                                                                                                  cccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacaccatgaccgagaacgactacac                           <  1:724280‑M2/150‑122 (MQ=255)                                                                                                                  cccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacaccatgaccgagaacgactacac                           <  1:1539832‑M2/150‑122 (MQ=255)                                                                                                                  cccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgca                                                       >  2:3047‑M2/1‑29 (MQ=255)                                                                                                                  cccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgca                                                       <  1:3047‑M2/122‑94 (MQ=255)                                                                                                                  CCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGa                                                                  >  1:1522407‑M1/1‑111 (MQ=255)                                                                                                                  CCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGa                                                                  <  2:1522407‑M1/111‑1 (MQ=255)                                                                                                                   ccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttcgctggcttgcacgaacaccatgaccgagaacgactacacc                          <  1:16744‑M2/150‑123 (MQ=255)                                                                                                                   CCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCt                          <  1:1167668‑M1/150‑1 (MQ=255)                                                                                                                    cGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacaccatgaccgagaacgactacacct                         <  1:926673‑M2/150‑124 (MQ=255)                                                                                                                     gCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaaggggccggcacaggcaaccactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacaccatgaccgagaacgactacacctt                        <  2:541962‑M2/150‑125 (MQ=255)                                                                                                                     gCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacaccatgaccgagaacgactacacctt                        <  2:1863043‑M2/150‑125 (MQ=255)                                                                                                                     GCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGc                        <  2:85559‑M1/150‑1 (MQ=255)                                                                                                                      CTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCa                       <  1:1913732‑M1/150‑1 (MQ=255)                                                                                                                       tCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacaccatgaccgagaacgactacaccttcg                      <  2:1876856‑M2/150‑127 (MQ=255)                                                                                                                       TCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCaa                      <  2:62007‑M1/150‑1 (MQ=255)                                                                                                                       TCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCaa                      <  2:61885‑M1/150‑1 (MQ=255)                                                                                                                             cTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTa                                   >  2:1551216/1‑131 (MQ=255)                                                                                                                             cTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTa                                   <  1:1551216/131‑1 (MQ=255)                                                                                                                             cTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAgcgc                >  2:1545834/1‑150 (MQ=255)                                                                                                                                        cccTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGa     <  2:1167668/150‑1 (MQ=255)                                                                                                                                         ccTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg    <  1:61885/150‑1 (MQ=255)                                                                                                                                         ccTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg    <  1:62007/150‑1 (MQ=255)                                                                                                                                          cTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGa              >  1:356877/1‑139 (MQ=255)                                                                                                                                          cTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGa              <  2:356877/139‑1 (MQ=255)                                                                                                                                          cTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAgg   >  1:589626/1‑150 (MQ=255)                                                                                                                                           tGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGt  >  2:1289105/1‑150 (MQ=255)                                                                                                                                              |                                                                                                                                                   GTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGT  >  NC_002947/5201543‑5201830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.