| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5382480 | 7 (0.090) | 8 (0.150) | 7/184 | NT | 48.4% | intergenic (+52/+81) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | = 5382508 | 12 (0.220) | intergenic (+80/+53) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
GCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGA > NC_002947/5382365‑5382656 | gcgcGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgt > 2:672160‑M2/1‑144 (MQ=255) cgcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtg > 2:632219‑M2/1‑143 (MQ=255) tgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTgg > 2:45426‑M1/80‑150 (MQ=255) tgcatgaggcgcacgaagaagcccagcgggtggcgcgggcagagcggcgcagcgggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGCCACCAGCTTCCAGCCCACCGCCTAttctggtt > 2:118826‑M1/80‑147 (MQ=255) gcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgg > 1:569915‑M2/1‑142 (MQ=255) cgcgATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcg > 1:1721625‑M2/1‑137 (MQ=255) gcgATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgg > 1:698982‑M2/1‑136 (MQ=255) ttCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt > 1:1088519‑M2/1‑132 (MQ=255) ggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtgt < 1:1809650‑M1/69‑1 (MQ=255) ggcgctgaggcttttatgggcagtaCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtgt > 2:1809650‑M1/26‑94 (MQ=255) ccTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt < 1:1903146‑M2/87‑19 (MQ=255) ccTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt > 2:1903146‑M2/1‑69 (MQ=255) GCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTgcgc < 2:1635256‑M1/150‑1 (MQ=255) CCGNTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCACTACCC‑CGCCTTCCCGCTGGGCTTCTTCGTGCgccc < 2:1186246‑M1/150‑2 (MQ=255) CCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCt < 1:1358375‑M1/150‑1 (MQ=255) cGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatc < 1:1488784‑M2/147‑107 (MQ=255) cGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatc > 2:1488784‑M2/1‑41 (MQ=255) GCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCa < 2:228175‑M1/150‑1 (MQ=255) CTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCAt < 2:661002‑M1/150‑1 (MQ=255) CCANAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATgca < 2:1201265‑M1/150‑1 (MQ=255) CCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATgca < 2:40825‑M1/150‑1 (MQ=255) cacaGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttcc < 2:141084‑M2/110‑76 (MQ=255) cacaGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttcc > 1:141084‑M2/1‑35 (MQ=255) CACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATgcag < 1:534104‑M1/150‑1 (MQ=255) acaGGAATGGCACCAGATTCGAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcgc < 1:1407361‑M2/150‑117 (MQ=255) aGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagcgtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcgcat < 2:360943‑M2/150‑119 (MQ=255) aGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcgcat < 2:1511074‑M2/150‑119 (MQ=255) AGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAc < 1:947677‑M1/150‑1 (MQ=255) tGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAcctcct < 1:661002/150‑1 (MQ=255) tGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAcctcct > 2:1522459/1‑150 (MQ=255) aCCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGcac > 2:979323/1‑150 (MQ=255) aTTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACa > 2:1581725/1‑150 (MQ=255) cAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACaaaa < 1:40825/150‑1 (MQ=255) aGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCCCCTCCTGCACATACAAAAtg > 1:1462958/1‑150 (MQ=255) cccGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGc > 2:1486031/1‑62 (MQ=255) cccGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGc < 1:1486031/62‑1 (MQ=255) ccGGTGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACaaa < 2:526866/144‑1 (MQ=255) ccGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACaaa > 1:526866/1‑144 (MQ=255) ccGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACACAATGTGc > 1:1342107/1‑150 (MQ=255) ccGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGc > 2:1501831/1‑150 (MQ=255) gcgcCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcgcatggtgtcgcgcttgtcgaattccttc > 1:1511074‑M2/1‑7 (MQ=255) cTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTgg > 1:784976/1‑150 (MQ=255) tATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTggt > 2:1732162/1‑149 (MQ=255) | GCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCA‑CCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGA > NC_002947/5382365‑5382656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |