| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,970,049 | C→A | 6.4% | G80V (GGC→GTC) | fliC ← | flagellin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,970,049 | 0 | C | A | 6.4% | 245.8 / 3.8 | 78 | G80V (GGC→GTC) | fliC | flagellin |
| Reads supporting (aligned to +/- strand): ref base C (38/35); new base A (3/2); total (41/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 | |||||||||||
TGGTGTTAGCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCAGAGGACAGACG > NC_002947/4969900‑4970197 | tggtgTTAGCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGgcgc < 1:395657/150‑1 (MQ=255) gtgtTAGCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCt > 1:1816558/1‑150 (MQ=255) gtTAGCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTc < 1:1732530/150‑1 (MQ=255) ttAGCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCttaa > 1:1925365/1‑148 (MQ=255) ttAGCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTca > 1:748775/1‑150 (MQ=255) ttAGCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTca > 2:1071162/1‑150 (MQ=255) ttAGCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCATTATGGCCCCATGGCTCCTTca < 2:1418583/150‑1 (MQ=255) ttAGCAATACGGGTGAGATCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCTGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTca > 2:962884/1‑150 (MQ=255) gCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTGCTGCTGGACGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTca‑gca > 1:38600/1‑150 (MQ=255) gTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACTCTTCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCa > 1:1367269/1‑150 (MQ=255) cTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATaga > 1:1141926/1‑150 (MQ=255) gCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGAt > 2:1320590/1‑150 (MQ=255) ccGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATAc < 1:1336200/150‑1 (MQ=255) gACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCa > 1:575139/1‑150 (MQ=255) gACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCa < 1:303119/150‑1 (MQ=255) cAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATc < 1:1011680/150‑1 (MQ=255) aGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCg > 1:1909709/1‑150 (MQ=255) ggTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGc > 1:1075901/1‑150 (MQ=255) gTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCg > 1:1494299/1‑150 (MQ=255) tAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGt < 2:776186/150‑1 (MQ=255) aaCTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTc < 2:575139/150‑1 (MQ=255) cTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCtt < 2:1925365/150‑1 (MQ=255) ccggctgcATGGGGGCGCGGTCGTCAGCGCTGTTCGAGCCGTGCGCCGATTGCAGGGCCAGTGCACGCATACGCTTCATCATGTTGCCTGAAGGCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGa < 1:69305/147‑1 (MQ=255) ccTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGa < 2:1816558/150‑1 (MQ=255) ctgctgCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGAc > 2:1625912/1‑150 (MQ=255) tgctgcATGGAGGCGCGGTCGTCATCGCTGTGCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGAcc < 2:138254/150‑1 (MQ=255) gcATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCaa > 1:780347/1‑150 (MQ=255) tGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGc > 2:51599/1‑150 (MQ=255) cgcgGTCGTCCTCGCTGTTCGACACGTTGATCCACTACATTTCCATGTCAGGCGTACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGCTACCATCGTTGGCGTTCTTGACCGCAACGCTCAGAc < 2:1646518/150‑1 (MQ=255) gtcgtcATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCttt < 2:1717383/150‑1 (MQ=255) tcgtcATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCtttg > 1:577274/1‑150 (MQ=255) aTCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCtttgatttg > 2:545545/1‑150 (MQ=255) tCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCtttgatttga < 2:1092252/150‑1 (MQ=255) gCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGt < 1:51599/150‑1 (MQ=255) tGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTgg < 2:780347/150‑1 (MQ=255) ttCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACTCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTc > 1:1650349/1‑150 (MQ=255) tCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCa < 2:1691907/150‑1 (MQ=255) gTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGtt > 2:724263/1‑150 (MQ=255) gCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTGGATTTGCGTGGTCAGACGGTTGgag > 2:714511/1‑150 (MQ=255) ccGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTg > 1:774294/1‑146 (MQ=255) ccGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTg < 2:774294/146‑1 (MQ=255) ccGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGgaga > 2:1819959/1‑150 (MQ=255) cAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAg > 1:1236842/1‑150 (MQ=255) cAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAg < 1:454997/150‑1 (MQ=255) gacAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCt > 2:651167/3‑150 (MQ=255) gCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCtttga < 2:46920/115‑1 (MQ=255) gCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCtttga > 1:46920/1‑115 (MQ=255) gTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTgcgg < 1:962884/150‑1 (MQ=255) aCGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGgag < 2:1665096/130‑1 (MQ=255) aCGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGgag > 1:1665096/1‑130 (MQ=255) tcATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGcgtcgt < 2:1650349/149‑1 (MQ=255) gCANACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGcgtcgt > 2:1191719/1‑150 (MQ=255) cATACGCTGCATAATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCgtcgtc > 2:1715703/1‑150 (MQ=255) tACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCtt < 2:748775/150‑1 (MQ=255) gCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACAATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTgg > 1:1163061/1‑150 (MQ=255) gatgTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGtt < 2:177951/150‑1 (MQ=255) tgcTGAAGGCGCCATGGCGACTTCAGGCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGAttt > 2:1666433/3‑150 (MQ=255) ccTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCt > 1:210198/1‑120 (MQ=255) ccTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCt < 2:210198/120‑1 (MQ=255) ccTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGcgtc < 1:780520/128‑1 (MQ=255) ccTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGcgtc > 2:780520/1‑128 (MQ=255) cTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCt < 2:84851/60‑1 (MQ=255) cTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCt > 1:84851/1‑60 (MQ=255) cTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCa > 2:1145073/1‑150 (MQ=255) tGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCTCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAg < 2:38600/150‑1 (MQ=255) tGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAg > 1:589095/1‑150 (MQ=255) tGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAg < 2:1141926/150‑1 (MQ=255) tGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAg < 1:545545/150‑1 (MQ=255) tGAAGGCGCCATGGCGACTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAg > 1:1577499/1‑150 (MQ=255) tGAAGGCGCCATGGCGACTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAg < 2:1577499/150‑1 (MQ=255) aaggcGCCATGGCGACTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCtttga < 2:897681/77‑1 (MQ=255) aaGGCGCCATGGCGACTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCtttga > 1:897681/1‑81 (MQ=255) tCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCag < 2:1075901/150‑1 (MQ=255) cGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTAGTCTTTGGCACTGTTGATTTTCAGGCCaga < 1:180932/150‑1 (MQ=255) gCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCagag < 1:1614685/150‑1 (MQ=255) gCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCa > 2:1919595/1‑147 (MQ=255) gCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCa < 1:1919595/147‑1 (MQ=255) ccATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCAGAgg > 1:1610145/1‑150 (MQ=255) cATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCAGAGGa > 1:1911518/1‑150 (MQ=255) gcgcCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCAGAGGACAga > 1:818400/1‑150 (MQ=255) gcCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCa > 2:1228650/1‑59 (MQ=255) gcCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCa < 1:1228650/59‑1 (MQ=255) gcCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCAGAGGACAgacg > 1:1195642/1‑150 (MQ=255) ccTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGt > 1:192863/1‑74 (MQ=255) ccTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGt < 2:192863/74‑1 (MQ=255) | TGGTGTTAGCAATACGGGTGAGCTCGCCCGACAGCGCGGTAAACTCCTGCTGCATGGAGGCGCGGTCGTCATCGCTGTTCGAGCCGTTCGCCGATTGCAGGGCCAGTTCACGCATACGCTGCATGATGTTGCCTGAAGTCGCCATGGCGCCTTCA‑GCAGTTTGCGCAATAGAGATACCATCGTTGGCGTTCTTGACCGCAACGCTCAGACCTTTGATTTGAGTGGTCAGACGGTTGGAGATCTGCAGGCCTGCGGCGTCGTCTTTGGCACTGTTGATTTTCAGGCCAGAGGACAGACG > NC_002947/4969900‑4970197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |