Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,313,324 | C→G | 10.7% | intergenic (‑595/+119) | PP_16SG ← / ← msrQ | 16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,313,324 | 0 | C | G | 10.7% | 158.4 / 11.0 | 56 | intergenic (‑595/+119) | PP_16SG/msrQ | 16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit |
Reads supporting (aligned to +/- strand): ref base C (28/22); new base G (3/3); total (31/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.60e-01 |
TCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCTTGGGAAGCGCCCGC > NC_002947/5313179‑5313470 | tCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTTAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCATGTGTTCGCCACAACAGTTTCAGCGCCGATGAGATCGAGCGCCGCCcgcg < 1:239805/150‑1 (MQ=255) tGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCgcggc > 1:1085671/1‑150 (MQ=255) tGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCgcggc > 1:1399950/1‑150 (MQ=255) aGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTc < 2:1762555/150‑1 (MQ=255) gggCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCGGCTCGGGTCTCGAtc > 2:1051545/1‑150 (MQ=255) gcgcATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGAtctc > 1:709948/1‑150 (MQ=255) gcgcATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGAtctc > 1:385616/1‑150 (MQ=255) taAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGc > 1:892784/1‑150 (MQ=255) gggATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCaga > 2:1739953/1‑150 (MQ=255) ccGTAAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCgg < 2:1600262/149‑1 (MQ=255) tCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGcc > 1:690134/1‑150 (MQ=255) aTTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAg < 2:1017648/150‑1 (MQ=255) tttCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTAGATCTCACATACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGc > 2:247948/1‑150 (MQ=255) aGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTg < 1:214957/150‑1 (MQ=255) gAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGc > 1:1738075/1‑150 (MQ=255) aGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTAt > 1:1223019/1‑150 (MQ=255) gAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTAtctc < 1:176948/150‑1 (MQ=255) taAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTca > 1:1433604/1‑94 (MQ=255) taAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTca < 2:1433604/94‑1 (MQ=255) taAGGGGAAATACCGTATCGGGGCTGCCAAGTGTCCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACa < 1:1051545/150‑1 (MQ=255) aaGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAg < 2:1223019/150‑1 (MQ=255) gggAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGccc > 2:1795582/1‑150 (MQ=255) gAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCt < 2:1085671/150‑1 (MQ=255) gAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCt > 1:40753/1‑150 (MQ=255) tACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGc > 2:1493673/1‑150 (MQ=255) ccGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCCCT‑CCACAGCCGTTGCTATCTCAAGACAGGCCCTTGGCAg > 2:861183/1‑150 (MQ=255) tATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGAGCTCACAGACGCCAGAGAAAGAAACGCGAGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGccc > 1:605074/1‑150 (MQ=255) gggCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTATACCAC‑GCCATTAATAAATCAATTCAGACCGATAGCAGccccaccc > 2:1852835/1‑150 (MQ=21) gCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTg < 1:559073/136‑1 (MQ=255) gCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTg > 2:559073/1‑136 (MQ=255) gtgtTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCaaa < 1:752176/150‑1 (MQ=255) ttCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTg > 1:174192/1‑125 (MQ=255) ttCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTg < 2:174192/125‑1 (MQ=255) gCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGccc > 1:739728/1‑150 (MQ=255) ccACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATCGCTATCTCAAGCCAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGcccc > 1:1457959/1‑149 (MQ=255) cacaACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGccccac < 2:265527/130‑1 (MQ=255) cacaACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGccccac > 1:265527/1‑130 (MQ=255) acaGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCt < 2:1738075/150‑1 (MQ=255) acaGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCt < 1:467642/150‑1 (MQ=255) gcgcCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCAct > 2:665733/1‑123 (MQ=255) gcgcCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCAct < 1:665733/123‑1 (MQ=255) gcgcCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAAcc > 2:1117419/1‑131 (MQ=255) gcgcCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAAcc < 1:1117419/131‑1 (MQ=255) gcgcCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTgg < 1:1739953/150‑1 (MQ=255) tGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCtt > 2:285739/1‑150 (MQ=255) agaTCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCTTgg < 2:892784/150‑1 (MQ=255) aTCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTgg < 2:908799/97‑1 (MQ=255) aTCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTgg > 1:908799/1‑97 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATAAAACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCTTGGGaa > 1:990132/1‑150 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCTTGGGaa < 1:1852835/150‑1 (MQ=255) ccGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCTTGGGaa < 1:285739/149‑1 (MQ=255) cGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCActct < 2:1698325/112‑1 (MQ=255) cGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCActct > 1:1698325/1‑112 (MQ=255) gAGCGCCGCCCGCGCGGCGCTCGAGCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGCCCCTCGGCAGCCCCACACCAATCTTACAAGGCCCGCCCCTGCTACCCGGCAGCCTTGGGAAgc > 2:207567/1‑150 (MQ=255) gcgcCGCGCGGGCGGCGCTCGATCTCACAGACGCCAGAGAAAc > 2:1738594/1‑43 (MQ=14) gcgcCGCGCGGGCGGCGCTCGATCTCACAGACGCCAGAGAAAc < 1:1738594/43‑1 (MQ=14) cgcccgcGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCAACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCTTGGGAAGCGCCcgc > 1:107697/1‑150 (MQ=255) cccgcGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCTTGGGAAgc > 1:659557/1‑142 (MQ=255) cccgcGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCTTGGGAAgc < 2:659557/142‑1 (MQ=255) | TCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAAGAAAGTGAAATATAAGGGGAAATACCGTATCGGGGCTGCCAAGTGTTCGCCACAACAGTTTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGACGCCAGAGAAACAAAGGCGGGCCCTCT‑CCACAGCCATTGCTATCTCAAGACAGGCCCTTGGCAGCCCCACCCCACTCTCAAACCGCCCTACCCTGCTACCTGGCAACCTTGGGAAGCGCCCGC > NC_002947/5313179‑5313470 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |