| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,685,670 | T→C | 9.2% | S427G (AGC→GGC) | PP_4988 ← | signal transduction histidine kinase CheA/CheY‑like receiver |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,685,670 | 0 | T | C | 9.2% | 240.5 / 11.1 | 90 | S427G (AGC→GGC) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
| Reads supporting (aligned to +/- strand): ref base T (45/35); new base C (2/6); total (47/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.81e-01 | |||||||||||
ACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCAAGTGCGTCAGCT > NC_002947/5685522‑5685819 | aCTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTg < 2:741463/150‑1 (MQ=255)aCTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTg > 1:1147493/1‑150 (MQ=255)aCTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCAGCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTg > 2:1338754/1‑150 (MQ=255) cccAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGACAGTGGCGCTCGCTGTACGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCg > 1:1673407/1‑150 (MQ=255) ccAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGCTTGCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGa > 2:927862/1‑150 (MQ=255) cAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGCCCAACCAAAGCAGCGATGCCATC‑GCCATTGCCGTCCTGGTCGGGGCCAGCCCAGac > 2:989336/1‑150 (MQ=255) gTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCGGGGCAAGCCCAGacca < 2:934333/150‑1 (MQ=255) tGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCGGGGCCAGCCCAGaccag < 1:816511/150‑2 (MQ=255) ccTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCGGGGCCAGCCCAGaccagga < 2:1530841/150‑4 (MQ=255) ccTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTAAAGGCCTGGTCGGGGCCAGCCCAGaccagga < 1:989336/150‑4 (MQ=255) cTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACcaccac > 1:408114/1‑150 (MQ=255) cTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCGGGGCCAGCCCAGaccaggac < 1:1322427/150‑5 (MQ=255) cTCGCGCTGCGGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCGGGGCCAGCCCAGaccaggac < 1:558142/150‑5 (MQ=255) tCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCGCTATTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACg < 1:19802/150‑1 (MQ=255) ctgGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGcac > 1:1339608/1‑150 (MQ=255) ctgGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGcac > 1:468783/1‑150 (MQ=255) ggTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCacac > 1:735592/1‑150 (MQ=255) gtggTCTGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGTCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACAcc > 2:27810/4‑150 (MQ=255) tCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAgc > 1:56120/1‑150 (MQ=255) gCACGCCAGCGCAGCCAGTGGCGCTCGATTTCAGACAGCGGTTCGCGCGCTTCGGCAAGGAACACTTGGCGGCGCCCTTGGT‑ATCGAGATCGGCCGTGGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGcgcc > 1:1875915/1‑150 (MQ=255) cAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCacac < 2:927254/136‑1 (MQ=255) cAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCacac > 1:927254/1‑136 (MQ=255) aGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGc > 2:1361744/1‑150 (MQ=255) gcAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTgg < 2:1339608/150‑1 (MQ=255) aGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCTAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAACGCCGCCAGGCTGGcc > 2:986427/1‑150 (MQ=255) tGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGcc > 1:249839/1‑150 (MQ=255) cgcTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCAtc > 1:450039/1‑150 (MQ=255) gcTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCAtct < 2:1673407/150‑1 (MQ=255) cTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCAtctc > 1:1719045/1‑150 (MQ=255) cGATTTCCGGAAGCAGTTCGACCGCCTCGTCAAGGGTTAGTTGGCGAAGCTCATCATCGATGCCATT‑GTCTTTTCCTTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGa < 1:329445/150‑1 (MQ=255) cGAGTTCCGGCAGCAGTCCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGa < 1:322328/150‑1 (MQ=255) aTTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGTCCGTGCCATCTCGATa > 2:972836/1‑150 (MQ=255) tttCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATaa > 1:1112320/1‑150 (MQ=255) ttCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGACCTCTCGATaaa < 2:967785/150‑1 (MQ=255) cGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAggg > 1:691576/1‑150 (MQ=255) ggCAGCAGTTCGCCCGCCTCGCCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGTTGGCCCGTGCCATCTCGATAAAGGGt > 1:1840625/1‑150 (MQ=255) gcagcaGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGtt > 2:854061/1‑150 (MQ=255) gcagcaGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGtt > 2:1271632/1‑150 (MQ=255) gTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCAt < 1:934456/150‑1 (MQ=255) tCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCg < 2:1719045/150‑1 (MQ=255) gcccgccTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGccgatggc > 2:1240338/1‑144 (MQ=255) cccgccTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGcc > 2:111608/1‑150 (MQ=255) gccTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGc > 1:493558/1‑150 (MQ=255) cTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTg < 1:301825/135‑1 (MQ=255) cTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTg > 2:301825/1‑135 (MQ=255) tCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCggg > 2:365270/1‑150 (MQ=255) cGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGt < 1:986427/150‑1 (MQ=255) aaGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGa < 2:1749830/119‑1 (MQ=255) aaGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGa > 1:1749830/1‑119 (MQ=255) ggAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCGGGGCCAGCCCAGaccagg < 1:28712/71‑3 (MQ=25) ggAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCGGGGCCAGCCCAGaccagg > 2:28712/1‑69 (MQ=25) gAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCg > 2:972558/1‑133 (MQ=255) gAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCg < 1:972558/133‑1 (MQ=255) gAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTgccgc < 2:1147493/150‑1 (MQ=255) cTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTgcc < 1:1248028/143‑1 (MQ=255) cTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTgcc > 2:1248028/1‑143 (MQ=255) ggCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCAtt < 1:1338754/150‑1 (MQ=255) ggCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCAtt < 1:927862/150‑1 (MQ=255) gAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCa < 1:1012535/150‑1 (MQ=255) aaGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAg < 1:1750698/150‑1 (MQ=255) aaGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAg < 2:1913656/150‑1 (MQ=255) atcTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCGAGCGGGTCTGCCGCCCGCCATTGCAgg < 1:449952/148‑1 (MQ=255) gCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCCCCATTGCAGGt > 2:707633/1‑150 (MQ=255) cTCATCATCGATGTCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTa < 1:27810/150‑1 (MQ=255) tcatctGCGATGCTTTC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAg > 2:1461688/1‑150 (MQ=255) atcatcGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCCGCGCCGCCAGGCTGTCCCGTGCCATCAGGATGAAGGGTTGACCATCGGCCCGCGGGCCTGCCCCCCGCCATTGCAGGTAgat > 2:449952/1‑148 (MQ=255) atcGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTc > 2:697193/1‑150 (MQ=255) atcGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCCTTCGTAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTc > 1:19069/1‑150 (MQ=255) cGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCGGGCCCCGACCACCACGCACCGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCgg < 2:462558/150‑1 (MQ=255) tgagcttC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCa < 2:1025311/144‑1 (MQ=255) aTGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCa < 1:1020712/150‑1 (MQ=255) aTGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCa < 2:468783/150‑1 (MQ=255) aTC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGcgcc > 1:132428/1‑61 (MQ=255) aTC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGcgcc < 2:132428/61‑1 (MQ=255) aTC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCCACGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCt > 1:1069542/1‑150 (MQ=255) cATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTg > 1:1034876/1‑150 (MQ=255) gCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTc < 1:1361744/150‑1 (MQ=255) ccGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCg < 2:1875915/150‑1 (MQ=255) ccGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCg < 1:1271632/150‑1 (MQ=255) tGGTCTGGGCTGGCCCGGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCAAg < 2:970158/150‑1 (MQ=255) gTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAg < 1:638841/114‑1 (MQ=255) gTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAg > 2:638841/1‑114 (MQ=255) tCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCAAGTGc > 2:678578/1‑150 (MQ=255) tGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCaa < 2:1134605/144‑1 (MQ=255) tGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCaa > 1:1134605/1‑144 (MQ=255) tGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCAAGTGCGt > 2:350919/1‑150 (MQ=255) gggCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAg > 1:551875/1‑131 (MQ=255) gggCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAg < 2:551875/131‑1 (MQ=255) ggCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCACCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCaa < 1:1331917/142‑1 (MQ=255) ggCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCACCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCaa > 2:1331917/1‑142 (MQ=255) tGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCAAGTGCGTCAGCt < 1:883793/150‑1 (MQ=255) | ACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATC‑GCCATTGCCGTCCTGGTCTGGGCTGGCCCCGACCACCACGCACTGCACACCCAGCGCCGCCAGGCTGGCCCGTGCCATCTCGATAAAGGGTTGGCCATCGGCCAGCGGGTCTGCCGCCCGCCATTGCAGGTAGCATTCGGCAGCGCTCAGTGCCTCGGCCAAGTGCGTCAGCT > NC_002947/5685522‑5685819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |