Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,777,607 T→G 9.9% Q675P (CAG→CCG) ‡ PP_5065 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,777,6070TG 9.9% 230.1 / 14.7 87Q675P (CAG→CCG) ‡PP_5065hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (36/42);  new base G (4/5);  total (40/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

GCGGCCCCTTTCACGTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATGGGCGTCGCCT  >  NC_002947/5777460‑5777754
                                                                                                                                                   |                                                                                                                                                   
gCGGCCCCTTTCACGTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTgc                                                                                                                                                   >  2:315408/1‑150 (MQ=255)
  ggCCCCTTTCACGTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTgcgc                                                                                                                                                 <  1:571705/150‑1 (MQ=255)
     cccTTTCACGTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAg                                                                                                                                              >  2:510510/1‑150 (MQ=255)
        tttCACGTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCAGGCGCCAggcg                                                                                                                                           <  1:1701251/150‑4 (MQ=255)
           cACGTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCtt                                                                                                                                        >  1:489039/1‑150 (MQ=255)
            aCGTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCAGGCGCCAggcgg                                                                                                                                          >  2:597348/1‑143 (MQ=255)
            aCGTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCAGGCGCCAggcgg                                                                                                                                          <  1:597348/147‑5 (MQ=255)
              gattGCTCAGGCGGGCAGCGCAAAAAATCTGCGAATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCTCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAg                                                                                                                                     <  2:983310/148‑1 (MQ=255)
              gTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCGGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAg                                                                                                                                     <  2:1669324/150‑1 (MQ=255)
              gTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAg                                                                                                                                     >  2:247698/1‑150 (MQ=255)
              gTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAg                                                                                                                                     <  1:1677490/150‑1 (MQ=255)
                 tGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGca                                                                                                                                  <  1:845444/150‑1 (MQ=255)
                 tGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGca                                                                                                                                  <  1:745537/150‑1 (MQ=255)
                    tCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCccac                                                                                                                               >  2:366192/1‑150 (MQ=255)
                      gggCGGGCAGCGGAAAAAATGTGCGCATCAACGAATCATCCGCGACACCCAGGCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTGAAGGcactggc                                                                                                                             <  2:809342/149‑5 (MQ=255)
                                 gcAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGa                                                                                                                  >  1:1627000/1‑150 (MQ=255)
                                  cAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGAt                                                                                                                 <  2:1167615/150‑1 (MQ=255)
                                  cAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGAt                                                                                                                 >  2:411401/1‑150 (MQ=255)
                                     aaaaTGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAAt                                                                                                              >  2:746195/1‑150 (MQ=255)
                                     aaaaTGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAAt                                                                                                              <  2:444455/150‑1 (MQ=255)
                                      aaaTGTGCGCATCAACGAATCATCCTCGACACCCCATATTCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAAtt                                                                                                             <  1:1039515/150‑1 (MQ=255)
                                      aaaTGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAAtt                                                                                                             <  1:356852/150‑1 (MQ=255)
                                       aaTGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATtg                                                                                                            >  1:246594/1‑150 (MQ=255)
                                        aTGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAACGCGATCATtgt                                                                                                           <  2:967878/150‑1 (MQ=255)
                                        aTGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATtgt                                                                                                           <  1:646972/150‑1 (MQ=255)
                                           tgCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGcc                                                                                                        <  1:936809/150‑1 (MQ=255)
                                            gcgcATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGccc                                                                                                       >  1:795053/1‑150 (MQ=255)
                                              gcATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCtt                                                                                                     <  2:1518309/150‑1 (MQ=255)
                                                   aaCGAATCATCCTCGACGCCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACg                                                                                                >  2:434940/1‑150 (MQ=255)
                                                    aCGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTaaa                                                                                                                      >  1:1866781/1‑127 (MQ=255)
                                                    aCGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTaaa                                                                                                                      <  2:1866781/127‑1 (MQ=255)
                                                    aCGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACgg                                                                                               >  1:476638/1‑150 (MQ=255)
                                                      gAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGcc                                                                                             <  2:489039/150‑1 (MQ=255)
                                                      gAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGcc                                                                                             <  2:1488626/150‑1 (MQ=255)
                                                      gAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGcc                                                                                             <  2:1627000/150‑1 (MQ=255)
                                                         tcatcCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTc                                                                                          <  1:710957/150‑1 (MQ=255)
                                                           atcCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCAc                                                                                        >  1:326899/1‑150 (MQ=255)
                                                              cTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAAtt                                                                                                             <  2:478886/126‑1 (MQ=255)
                                                              cTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAAtg                                                                                                             >  1:478886/1‑125 (MQ=255)
                                                              cTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCtt                                                                                     >  1:617195/1‑150 (MQ=255)
                                                               tCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCttt                                                                                    >  1:1801007/1‑150 (MQ=255)
                                                                cGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCtttt                                                                                   <  1:315408/150‑1 (MQ=255)
                                                                      ccAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACtt                                                                             >  1:1549307/1‑150 (MQ=255)
                                                                             ccccGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTa                                                                      >  1:995351/1‑150 (MQ=255)
                                                                               ccGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAgc                                                                    >  2:440509/1‑150 (MQ=255)
                                                                               ccGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAgc                                                                    <  2:995351/150‑1 (MQ=255)
                                                                                  ccAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGcc                                                                 >  1:1312429/1‑150 (MQ=255)
                                                                                    aGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCg                                                               <  2:795053/150‑1 (MQ=255)
                                                                                       gcCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGc                                                            <  1:411401/150‑1 (MQ=255)
                                                                                          tGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGcatc                                                         <  1:510510/150‑1 (MQ=255)
                                                                                                tCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTACAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCaaa                                                   <  2:794076/150‑1 (MQ=255)
                                                                                                tCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCaaa                                                   <  1:812571/150‑1 (MQ=255)
                                                                                                tCGAACAACTCTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCGGGCGCCGGCGCGAGGGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCaaa                                                   <  1:6498/150‑1 (MQ=255)
                                                                                                    acaacTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACt                                               >  1:742986/1‑150 (MQ=255)
                                                                                                      aacTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTcc                                             >  2:810238/1‑150 (MQ=255)
                                                                                                        cTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGc                                           <  2:1549307/150‑1 (MQ=255)
                                                                                                         tGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCACCATCAAAGACTCCGCt                                          >  2:1586040/1‑150 (MQ=255)
                                                                                                             cTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTtcat                                      <  2:82883/150‑1 (MQ=255)
                                                                                                                  cgcATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGt                                 >  2:1872516/1‑150 (MQ=255)
                                                                                                                       ttCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCt                            <  1:1872516/150‑1 (MQ=255)
                                                                                                                          acgcacgGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGa                         >  2:35574/1‑150 (MQ=255)
                                                                                                                            gcacgGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGaaa                       >  1:41337/1‑150 (MQ=255)
                                                                                                                             cacgGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGaaaa                      >  1:629411/1‑150 (MQ=255)
                                                                                                                               cgGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAgg                    <  1:247698/150‑1 (MQ=255)
                                                                                                                               cgGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCAGTCACCTTTTCAACTTGCAGGTAGCGACCGGGCATCTTCAAACACTCCGCTTTATTAGGTCTCCTTGAAAAgg                    <  2:1657373/150‑1 (MQ=255)
                                                                                                                                ggCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAggg                   <  1:440509/150‑1 (MQ=255)
                                                                                                                                 gCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAACGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTtcatc                                     >  2:1418271/1‑131 (MQ=255)
                                                                                                                                 gCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTtcatc                                     <  1:1418271/131‑1 (MQ=255)
                                                                                                                                   cTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCGTTGATTCCGCTTCATCAGGTCGCCTTGAAAAGGGccc                >  2:627924/1‑150 (MQ=255)
                                                                                                                                   cTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGccc                >  1:125579/1‑150 (MQ=255)
                                                                                                                                    ttCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGACCGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCg               >  1:1730693/1‑150 (MQ=255)
                                                                                                                                      cccGCCTGGCGCCTGCGCCAGTGCCTTCAGGAACACCTCGGTAAAATGTTAATGAAACCTTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCGGGTCGCCTTGAAAAGGGCCCGAt             <  2:990457/150‑1 (MQ=255)
                                                                                                                                       ccGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATg            <  2:326899/150‑1 (MQ=255)
                                                                                                                                        gcacTGGCGCAGGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATgg           >  1:1631493/4‑150 (MQ=255)
                                                                                                                                        cGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATgg           >  1:444109/1‑150 (MQ=255)
                                                                                                                                         gCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTCGCAGGTAGCGCCCGGGcatc                                                         <  1:1790443/103‑1 (MQ=255)
                                                                                                                                         gCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTCGCAGGTAGCGCCCGGGcatc                                                         >  2:1790443/1‑103 (MQ=255)
                                                                                                                                          acTGGCGCAGGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATg            <  1:1444730/146‑1 (MQ=255)
                                                                                                                                          acTGGCGCAGGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATg            >  2:1444730/2‑147 (MQ=255)
                                                                                                                                          acTGGCGCAGGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATGGGc         <  2:1631493/149‑1 (MQ=255)
                                                                                                                                          acTGGCGCAGGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATGGGc         >  1:755291/2‑150 (MQ=255)
                                                                                                                                               cgcCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATGGGCGTCGc    <  2:1801007/150‑1 (MQ=255)
                                                                                                                                                 ccTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCAGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATGGGCGTCGCCt  <  2:1312429/150‑1 (MQ=255)
                                                                                                                                                  cTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTtcat                                      <  1:276194/113‑1 (MQ=255)
                                                                                                                                                  cTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTtcat                                      >  2:276194/1‑113 (MQ=255)
                                                                                                                                                  cTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTtcat                                      >  2:1222745/1‑113 (MQ=255)
                                                                                                                                                  cTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTtcat                                      <  1:1222745/113‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GCGGCCCCTTTCACGTTTGCTCAGGCGGGCAGCGCAAAAAATGTGCGCATCAACGAATCATCCTCGACACCCAGTCGCCCCGCCAGCGCCTGGCGATCGAACAACTGTCCTGTGCGCATTTCACGCACGGCCTTCCCGCCTGGCGCCTGCGCCAGTGCCTTCAGGCACACCTCGGTAAAGCGATAATTGTGCCCTTGAACGGCCGTCACCTTTTCCACTTGCAGGTAGCGCCCGGGCATCATCAAAGACTCCGCTTCATCAGGTCGCCTTGAAAAGGGCCCGATGGGCGTCGCCT  >  NC_002947/5777460‑5777754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑