BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,798,774	G→C	6.0%	A382G (GCC→GGC)	PP_5077 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,798,774	0	G	C	6.0%	286.7 / 7.3	92	A382G (GCC→GGC)	PP_5077	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (47/39); new base C (2/4); total (49/43)
Fisher's exact test for biased strand distribution p-value = 4.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01

Only 100 of 101 total aligned reads displayed.

CGGCGGCTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTC  >  NC_002947/5798628‑5798922

cggcggCTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGgcag                                                                                                                                                   <  1:1510885/150‑1 (MQ=255)

  gcggcTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGgcaggc                                                                                                                                                 >  2:1888508/1‑150 (MQ=255)

  gcggcTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGgcaggc                                                                                                                                                 >  2:245755/1‑150 (MQ=255)

  gcggcTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGgcaggc                                                                                                                                                 <  1:1452575/150‑1 (MQ=255)

  gcggcTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTCCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCCGGCGCAACCGACTGCACGGGCTGGgcaggc                                                                                                                                                 <  2:1058742/150‑1 (MQ=255)

    ggcTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGgcaggcgc                                                                                                                                               >  2:1416432/1‑150 (MQ=255)

      cTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGgcaggcgcag                                                                                                                                             <  1:538025/150‑1 (MQ=255)

            tttCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCg                                                                                                                                       <  1:1416432/150‑1 (MQ=255)

             ttCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCgg                                                                                                                                      <  2:694411/150‑1 (MQ=255)

               cGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGCCCGGCGCCTGCGcctgcc                                                                                                                                    <  1:1357982/150‑5 (MQ=255)

                     cTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCGTGGGCGCAGGCGCAACCGACTGCACGGGCTGGCCCGGCGCCTGCGCCTGCCCAGccc                                                                                                                              <  2:364358/150‑2 (MQ=255)

                      tttGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCgg                                                                                                                             >  1:883200/1‑150 (MQ=255)

                        tGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGcc                                                                                                                           >  1:244576/1‑149 (MQ=255)

                         ggCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCgg                                                                                                                                      <  2:475093/138‑1 (MQ=255)

                         ggCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCgg                                                                                                                                      >  1:475093/1‑138 (MQ=255)

                            aGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCATGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACAcc                                                                                                                       >  1:14914/1‑150 (MQ=255)

                              ccGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGCCCGGCGCCTGCGCCTGCCCAGcc                                                                                                                               >  1:1081582/1‑140 (MQ=255)

                              ccGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGCCCGGCGCCTGCGCCTGCCCAGcc                                                                                                                               <  2:1081582/140‑1 (MQ=255)

                                 gCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTtgtg                                                                                                                  >  1:1811142/1‑150 (MQ=255)

                                 gCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTtgtg                                                                                                                  >  2:1390384/1‑150 (MQ=255)

                                   ttGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCgg                                                                                                                             >  1:1587139/1‑137 (MQ=255)

                                   ttGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCgg                                                                                                                             <  2:1587139/137‑1 (MQ=255)

                                   ttGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGc                                                                                                                <  2:1075560/150‑1 (MQ=255)

                                      gCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCCCACCTTGTGGCGGa                                                                                                             >  1:1881074/1‑150 (MQ=255)

                                      gCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGa                                                                                                             <  1:899481/150‑1 (MQ=255)

                                      gCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGa                                                                                                             >  1:1880825/1‑150 (MQ=255)

                                       ccACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGAACAAATTGTGGCGGAg                                                                                                            >  2:1046968/1‑150 (MQ=255)

                                        cACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGc                                                                                                           >  1:1675008/1‑150 (MQ=255)

                                        cACCGCTACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGc                                                                                                           >  2:27712/1‑150 (MQ=255)

                                         aCGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGGGCg                                                                                                          >  2:330443/1‑150 (MQ=255)

                                         aCGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCg                                                                                                          >  2:1691374/1‑150 (MQ=255)

                                           ggCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAt                                                                                                        >  1:1147793/1‑150 (MQ=255)

                                               aCCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggtg                                                                                                    <  2:1811142/150‑1 (MQ=255)

                                               aCCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggtg                                                                                                    <  2:1880825/150‑1 (MQ=255)

                                               aCCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggtg                                                                                                    <  2:1881074/150‑1 (MQ=255)

                                               aCCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggtg                                                                                                    <  1:1224901/150‑1 (MQ=255)

                                                  tGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTc                                                                                                 >  2:313325/1‑150 (MQ=255)

                                                      tCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACgg                                                                                             <  1:1702906/150‑1 (MQ=255)

                                                      gcGGCGCTGGGGGTGGTGTGGCCTGTGCAACCGGCGTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCCACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACgg                                                                                             <  2:144260/149‑1 (MQ=255)

                                                            cTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACggtgggtg                                                                                       >  2:389625/1‑150 (MQ=255)

                                                            cTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACggtgggtg                                                                                       <  2:883200/150‑1 (MQ=255)

                                                              ggTGCTGGCTTGGGGGGTGCAACCGGCTTGGCGGGGTGGGTGGCACCAGGTTTGGGGGCAGGCGCGACCGACTGCAGGGGGCGGGCACACGCAGGCGCCGGGCCAGGGGGGACACCGTGGGGCGGAGCGATGGTGGTCACGGTGGGTGGc                                                                                     <  2:212476/150‑1 (MQ=255)

                                                               gTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCg                                                                                    <  2:434958/150‑1 (MQ=255)

                                                                tGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGTGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCgg                                                                                   <  1:601421/150‑1 (MQ=255)

                                                                tGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCGTGGACGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGGGGGTGGCgg                                                                                   >  2:868481/1‑150 (MQ=255)

                                                                   tGGCTTGCCCGGAGGCCCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGGGCGATGGTGGTCACGGTGGGTGGCGGGtt                                                                                >  2:1513849/1‑150 (MQ=255)

                                                                          gCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGc                                                                         <  2:1675008/150‑1 (MQ=255)

                                                                          gCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGc                                                                         <  2:1556155/150‑1 (MQ=255)

                                                                           tcGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCt                                                                        >  2:1691940/2‑150 (MQ=255)

                                                                           ccGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCt                                                                        >  1:632243/1‑150 (MQ=255)

                                                                           ccGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCt                                                                        >  1:1695512/1‑150 (MQ=255)

                                                                           ccGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCt                                                                        >  1:1695717/1‑150 (MQ=255)

                                                                              gTGCAACCTGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCCCACCGGACTGCACGGGCGGGGCAGGAGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCa                                                                     <  1:1071287/150‑1 (MQ=255)

                                                                                  aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                 >  1:569636/1‑150 (MQ=255)

                                                                                  aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                 >  1:1753563/1‑150 (MQ=255)

                                                                                  aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                 >  2:1595694/1‑150 (MQ=255)

                                                                                  aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                 <  1:1888508/150‑1 (MQ=255)

                                                                                  aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                 >  1:571078/1‑150 (MQ=255)

                                                                                  aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                 <  1:245755/150‑1 (MQ=255)

                                                                                    ccGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGGGGCGGGTTGCCAGGCTGCAGCGCgg                                                               >  2:1108732/1‑150 (MQ=255)

                                                                                     cGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCGAGCCGGCACACCTTGTGGCGGAGAGATGGTGGACACGGTGGGCGGCTGGATGCCAGGCAGCAGCGCGgt                                                              >  1:797769/1‑150 (MQ=255)

                                                                                     cGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGgt                                                              <  1:27712/150‑1 (MQ=255)

                                                                                        cTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTc                                                           >  2:1323555/1‑150 (MQ=255)

                                                                                         ttGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCg                                                                                                                                       <  1:1631108/73‑1 (MQ=255)

                                                                                         ttGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCg                                                                                                                                       >  2:1631108/1‑73 (MQ=255)

                                                                                            gCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACa                                                       >  1:333187/1‑150 (MQ=255)

                                                                                                gCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCg                                                   <  1:1691374/150‑1 (MQ=255)

                                                                                                gCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCg                                                   <  1:700316/150‑1 (MQ=255)

                                                                                                 cTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCgg                                                  <  1:389625/150‑1 (MQ=255)

                                                                                                  tGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCggg                                                 >  1:800886/1‑150 (MQ=255)

                                                                                                   gggTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGc                                                <  1:313325/150‑1 (MQ=255)

                                                                                                     gTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGcgcg                                                                >  1:1661925/1‑132 (MQ=255)

                                                                                                     gTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGcgcg                                                                <  2:1661925/132‑1 (MQ=255)

                                                                                                      ttGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGcctc                                             >  1:493445/1‑150 (MQ=255)

                                                                                                      ttGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGcctc                                             >  1:1831314/1‑150 (MQ=255)

                                                                                                        gCAACAGGCTTGGGCGCAGGCGCAACCAATTGTACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGcctccc                                           <  2:1680266/150‑1 (MQ=255)

                                                                                                          aaCAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggt                                                                                                     <  2:1152599/90‑1 (MQ=255)

                                                                                                          aaCAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggt                                                                                                     >  1:1152599/1‑90 (MQ=255)

                                                                                                          aaCAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGcgcg                                                                <  2:1191878/127‑1 (MQ=255)

                                                                                                          aaCAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGcgcg                                                                >  1:1191878/1‑127 (MQ=255)

                                                                                                          aaCAGGCTTGGCCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCGGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTTGAGACGGCGGGTGGCAGCTTGCCAGGCTGCAGCGCGCTGTCGACGCCCGCGcctccctc                                         >  2:461024/1‑150 (MQ=255)

                                                                                                            cAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCtt                                       >  2:1252179/1‑150 (MQ=255)

                                                                                                               gCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTtgt                                                                                                                   <  1:1908837/71‑1 (MQ=255)

                                                                                                               gCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTtgt                                                                                                                   >  2:1908837/1‑71 (MQ=255)

                                                                                                                cTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCAcc                                   <  2:1427664/150‑1 (MQ=255)

                                                                                                                       gcaggcgcaACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCtt                                       >  1:1326106/1‑139 (MQ=255)

                                                                                                                       gcaggcgcaACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCtt                                       <  2:1326106/139‑1 (MQ=255)

                                                                                                                               aaCCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGc                    >  1:1838064/1‑150 (MQ=255)

                                                                                                                               aaCCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCAGGCACCTCTTATGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCAAGccgca                    >  1:1789470/1‑147 (MQ=255)

                                                                                                                                  cGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGc                 <  2:1748452/150‑1 (MQ=255)

                                                                                                                                   gACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCAAGccgcaggca                <  1:1323555/150‑8 (MQ=255)

                                                                                                                                    ccTGCACGGGCGGGCAAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCtt               <  2:632243/149‑1 (MQ=255)

                                                                                                                                     cTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTg              <  1:1676349/150‑1 (MQ=255)

                                                                                                                                      tgtgccggCTGGCCCGGCGCCTGCGCCTGCCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCtt                                       >  2:1795523/7‑124 (MQ=37)

                                                                                                                                      tGCACGGGCTGGGCGGGCGCAGGCGCCGGGCCAGCGGGCACACATTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTgg             <  2:211603/150‑1 (MQ=255)

                                                                                                                                        cACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGc           >  1:107334/1‑150 (MQ=255)

                                                                                                                                          cGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGcga         <  2:107334/150‑3 (MQ=255)

                                                                                                                                               tGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGc    >  2:1919601/1‑150 (MQ=255)

                                                                                                                                                gggCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGACAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCt   >  2:542560/1‑150 (MQ=255)

                                                                                                                                                 ggCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTc  >  1:1691505/1‑150 (MQ=255)

CGGCGGCTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTC  >  NC_002947/5798628‑5798922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`