BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,798,783	G→T	5.3%	P379H (CCT→CAT) ‡	PP_5077 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,798,783	0	G	T	5.3%	282.1 / 2.5	94	P379H (CCT→CAT) ‡	PP_5077	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (49/40); new base T (2/3); total (51/43)
Fisher's exact test for biased strand distribution p-value = 6.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.65e-01

Only 100 of 102 total aligned reads displayed.

CTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCA  >  NC_002947/5798634‑5798927

cTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGgcaggcgcag                                                                                                                                                  <  1:538025/150‑1 (MQ=255)

      tttCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCg                                                                                                                                            <  1:1416432/150‑1 (MQ=255)

       ttCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCgg                                                                                                                                           <  2:694411/150‑1 (MQ=255)

         cGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGCCCGGCGCCTGCGcctgcc                                                                                                                                         <  1:1357982/150‑5 (MQ=255)

               cTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCGTGGGCGCAGGCGCAACCGACTGCACGGGCTGGCCCGGCGCCTGCGCCTGCCCAGccc                                                                                                                                   <  2:364358/150‑2 (MQ=255)

                tttGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCgg                                                                                                                                  >  1:883200/1‑150 (MQ=255)

                  tGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGcc                                                                                                                                >  1:244576/1‑149 (MQ=255)

                   ggCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCgg                                                                                                                                           <  2:475093/138‑1 (MQ=255)

                   ggCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCgg                                                                                                                                           >  1:475093/1‑138 (MQ=255)

                      aGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCATGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACAcc                                                                                                                            >  1:14914/1‑150 (MQ=255)

                        ccGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGCCCGGCGCCTGCGCCTGCCCAGcc                                                                                                                                    >  1:1081582/1‑140 (MQ=255)

                        ccGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGCCCGGCGCCTGCGCCTGCCCAGcc                                                                                                                                    <  2:1081582/140‑1 (MQ=255)

                           gCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTtgtg                                                                                                                       >  1:1811142/1‑150 (MQ=255)

                           gCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTtgtg                                                                                                                       >  2:1390384/1‑150 (MQ=255)

                             ttGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCgg                                                                                                                                  <  2:1587139/137‑1 (MQ=255)

                             ttGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCgg                                                                                                                                  >  1:1587139/1‑137 (MQ=255)

                             ttGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGc                                                                                                                     <  2:1075560/150‑1 (MQ=255)

                                gCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCCCACCTTGTGGCGGa                                                                                                                  >  1:1881074/1‑150 (MQ=255)

                                gCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGa                                                                                                                  <  1:899481/150‑1 (MQ=255)

                                gCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGa                                                                                                                  >  1:1880825/1‑150 (MQ=255)

                                 ccACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGAACAAATTGTGGCGGAg                                                                                                                 >  2:1046968/1‑150 (MQ=255)

                                  cACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGc                                                                                                                >  1:1675008/1‑150 (MQ=255)

                                  cACCGCTACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGc                                                                                                                >  2:27712/1‑150 (MQ=255)

                                   aCGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGGGCg                                                                                                               >  2:330443/1‑150 (MQ=255)

                                   aCGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCg                                                                                                               >  2:1691374/1‑150 (MQ=255)

                                     ggCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAt                                                                                                             >  1:1147793/1‑150 (MQ=255)

                                         aCCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggtg                                                                                                         <  2:1881074/150‑1 (MQ=255)

                                         aCCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggtg                                                                                                         <  2:1811142/150‑1 (MQ=255)

                                         aCCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggtg                                                                                                         <  2:1880825/150‑1 (MQ=255)

                                         aCCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggtg                                                                                                         <  1:1224901/150‑1 (MQ=255)

                                            tGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTc                                                                                                      >  2:313325/1‑150 (MQ=255)

                                                tCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACgg                                                                                                  <  1:1702906/150‑1 (MQ=255)

                                                gcGGCGCTGGGGGTGGTGTGGCCTGTGCAACCGGCGTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCCACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACgg                                                                                                  <  2:144260/149‑1 (MQ=255)

                                                      cTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACggtgggtg                                                                                            >  2:389625/1‑150 (MQ=255)

                                                      cTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACggtgggtg                                                                                            <  2:883200/150‑1 (MQ=255)

                                                        ggTGCTGGCTTGGGGGGTGCAACCGGCTTGGCGGGGTGGGTGGCACCAGGTTTGGGGGCAGGCGCGACCGACTGCAGGGGGCGGGCACACGCAGGCGCCGGGCCAGGGGGGACACCGTGGGGCGGAGCGATGGTGGTCACGGTGGGTGGc                                                                                          <  2:212476/150‑1 (MQ=255)

                                                         gTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCg                                                                                         <  2:434958/150‑1 (MQ=255)

                                                          tGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGTGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCgg                                                                                        <  1:601421/150‑1 (MQ=255)

                                                          tGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCGTGGACGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGGGGGTGGCgg                                                                                        >  2:868481/1‑150 (MQ=255)

                                                             tGGCTTGCCCGGAGGCCCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGGGCGATGGTGGTCACGGTGGGTGGCGGGtt                                                                                     >  2:1513849/1‑150 (MQ=255)

                                                                    gCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGc                                                                              <  2:1556155/150‑1 (MQ=255)

                                                                    gCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGc                                                                              <  2:1675008/150‑1 (MQ=255)

                                                                     tcGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCt                                                                             >  2:1691940/2‑150 (MQ=255)

                                                                     ccGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCt                                                                             >  1:632243/1‑150 (MQ=255)

                                                                     ccGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCt                                                                             >  1:1695512/1‑150 (MQ=255)

                                                                     ccGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCt                                                                             >  1:1695717/1‑150 (MQ=255)

                                                                        gTGCAACCTGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCCCACCGGACTGCACGGGCGGGGCAGGAGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCa                                                                          <  1:1071287/150‑1 (MQ=255)

                                                                            aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                      <  1:245755/150‑1 (MQ=255)

                                                                            aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                      >  1:1753563/1‑150 (MQ=255)

                                                                            aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                      >  2:1595694/1‑150 (MQ=255)

                                                                            aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                      >  1:571078/1‑150 (MQ=255)

                                                                            aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                      <  1:1888508/150‑1 (MQ=255)

                                                                            aaCCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAgcgc                                                                      >  1:569636/1‑150 (MQ=255)

                                                                              ccGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGGGGCGGGTTGCCAGGCTGCAGCGCgg                                                                    >  2:1108732/1‑150 (MQ=255)

                                                                               cGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCGAGCCGGCACACCTTGTGGCGGAGAGATGGTGGACACGGTGGGCGGCTGGATGCCAGGCAGCAGCGCGgt                                                                   >  1:797769/1‑150 (MQ=255)

                                                                               cGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGgt                                                                   <  1:27712/150‑1 (MQ=255)

                                                                                  cTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTc                                                                >  2:1323555/1‑150 (MQ=255)

                                                                                   ttGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCg                                                                                                                                            <  1:1631108/73‑1 (MQ=255)

                                                                                   ttGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCg                                                                                                                                            >  2:1631108/1‑73 (MQ=255)

                                                                                      gCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACa                                                            >  1:333187/1‑150 (MQ=255)

                                                                                          gCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCg                                                        <  1:1691374/150‑1 (MQ=255)

                                                                                          gCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCg                                                        <  1:700316/150‑1 (MQ=255)

                                                                                           cTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCgg                                                       <  1:389625/150‑1 (MQ=255)

                                                                                            tGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCggg                                                      >  1:800886/1‑150 (MQ=255)

                                                                                             gggTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGc                                                     <  1:313325/150‑1 (MQ=255)

                                                                                               gTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGcgcg                                                                     >  1:1661925/1‑132 (MQ=255)

                                                                                               gTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGcgcg                                                                     <  2:1661925/132‑1 (MQ=255)

                                                                                                ttGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGcctc                                                  >  1:493445/1‑150 (MQ=255)

                                                                                                ttGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGcctc                                                  >  1:1831314/1‑150 (MQ=255)

                                                                                                  gCAACAGGCTTGGGCGCAGGCGCAACCAATTGTACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGcctccc                                                <  2:1680266/150‑1 (MQ=255)

                                                                                                    aaCAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggt                                                                                                          >  1:1152599/1‑90 (MQ=255)

                                                                                                    aaCAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGAtggt                                                                                                          <  2:1152599/90‑1 (MQ=255)

                                                                                                    aaCAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGcgcg                                                                     >  1:1191878/1‑127 (MQ=255)

                                                                                                    aaCAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGcgcg                                                                     <  2:1191878/127‑1 (MQ=255)

                                                                                                    aaCAGGCTTGGCCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCGGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTTGAGACGGCGGGTGGCAGCTTGCCAGGCTGCAGCGCGCTGTCGACGCCCGCGcctccctc                                              >  2:461024/1‑150 (MQ=255)

                                                                                                      cAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCtt                                            >  2:1252179/1‑150 (MQ=255)

                                                                                                         gCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTtgt                                                                                                                        <  1:1908837/71‑1 (MQ=255)

                                                                                                         gCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTtgt                                                                                                                        >  2:1908837/1‑71 (MQ=255)

                                                                                                          cTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCAcc                                        <  2:1427664/150‑1 (MQ=255)

                                                                                                                 gcaggcgcaACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCtt                                            >  1:1326106/1‑139 (MQ=255)

                                                                                                                 gcaggcgcaACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCtt                                            <  2:1326106/139‑1 (MQ=255)

                                                                                                                         aaCCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGc                         >  1:1838064/1‑150 (MQ=255)

                                                                                                                         aaCCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCAGGCACCTCTTATGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCAAGccgca                         >  1:1789470/1‑147 (MQ=255)

                                                                                                                            cGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGc                      <  2:1748452/150‑1 (MQ=255)

                                                                                                                             gACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCAAGccgcaggca                     <  1:1323555/150‑8 (MQ=255)

                                                                                                                              ccTGCACGGGCGGGCAAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCtt                    <  2:632243/149‑1 (MQ=255)

                                                                                                                               cTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTg                   <  1:1676349/150‑1 (MQ=255)

                                                                                                                                tgtgccggCTGGCCCGGCGCCTGCGCCTGCCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCtt                                            >  2:1795523/7‑124 (MQ=37)

                                                                                                                                tGCACGGGCTGGGCGGGCGCAGGCGCCGGGCCAGCGGGCACACATTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTgg                  <  2:211603/150‑1 (MQ=255)

                                                                                                                                  cACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGc                >  1:107334/1‑150 (MQ=255)

                                                                                                                                    cGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGcga              <  2:107334/150‑3 (MQ=255)

                                                                                                                                         tGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGc         >  2:1919601/1‑150 (MQ=255)

                                                                                                                                          gggCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGACAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCt        >  2:542560/1‑150 (MQ=255)

                                                                                                                                           ggCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTc       >  1:1691505/1‑150 (MQ=255)

                                                                                                                                              aggcgcaggcgcCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTg                                                                                    >  2:1471255/1‑70 (MQ=255)

                                                                                                                                              aggcgcaggcgcCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTg                                                                                    <  1:1471255/70‑1 (MQ=255)

                                                                                                                                                gcgcaggcgcCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACAATTTCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCa  >  2:152047/1‑150 (MQ=255)

                                                                                                                                                  gcaggcgcCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCgg                                                       <  2:630218/95‑1 (MQ=255)

                                                                                                                                                  gcaggcgcCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCgg                                                       >  1:630218/1‑95 (MQ=255)

                                                                                                                                                   caggcgcCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGgtgt                                                                 <  2:892826/84‑1 (MQ=255)

CTGGTTTTTCGGCAGCTTTGGCAGCCGGCTTGGCCACGGCGACCTGGGTCGGCGCTGGTGCTGGCTTGGCCGGTGCAACCGGCTTGGCGGGCTGGGTTGCAACAGGCTTGGGCGCAGGCGCAACCGACTGCACGGGCTGGGCAGGCGCAGGCGCCGGGCCAGCCGGCACACCTTGTGGCGGAGCGATGGTGGTCACGGTGGGTGGCGGGTTGCCAGGCTGCAGCGCGGTGTCGACAGCCGGGCCTCCCTCTTCACCCTCGCCCATGCCTGCGGCTTGGGCCAGCGGCTCGCGCA  >  NC_002947/5798634‑5798927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`