| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 652,767 | G→C | 9.9% | intergenic (‑101/+17) | dsbD‑I ← / ← ctpL | thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 652,767 | 0 | G | C | 9.9% | 240.6 / 16.4 | 82 | intergenic (‑101/+17) | dsbD‑I/ctpL | thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL |
| Reads supporting (aligned to +/- strand): ref base G (39/34); new base C (4/4); total (43/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.63e-01 | |||||||||||
GCCAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGG > NC_002947/652629‑652913 | gCCAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑T > 2:1916568‑M1/1‑150 (MQ=255) ccAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGC‑Tt < 2:768908‑M1/150‑2 (MQ=255) cagcagTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCG > 1:267767‑M1/1‑150 (MQ=255) cagcagTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATAGGCCCGAAACAAACGTCGGAGCGGGATGACCCGCGAAGCGCCGCGCGGGCGGCAC‑TCG > 2:329593‑M1/1‑150 (MQ=255) tAGGAACAGCATGAAAAATATGCGGCGCATGGCGGACTCGCGAGGGGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCa < 1:1532222/150‑1 (MQ=255) tAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCa < 2:1006796/150‑1 (MQ=255) aaGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCt < 1:106736/149‑1 (MQ=255) tGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATC < 2:42137‑M1/136‑1 (MQ=255) tGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATC > 1:42137‑M1/1‑136 (MQ=255) aaaaaCAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCt > 1:903472/1‑150 (MQ=255) aagcAGGCGGCTCAGGGGCGGCTCGCGAGGGGGAACGTGCCCGGCATGATAACGGATGCGGCGGACAAATTCGCCCGCAACAACCGTAGGAGCGGGCTTCTCGCCGGCAGGACCCTGGTCTTGCGC‑TCGATCTCAGACCCTGAACGCTCg < 1:1875854/147‑1 (MQ=255) aaCAGGCGGCGCGGGGCGGACTCGCGAGGTGGTACGTGCACGGCGTGATTGAAGTGCCTCAATAATTGTTTGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGc < 1:224001/150‑1 (MQ=18) gcgcATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCg > 1:339247/1‑150 (MQ=255) cATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATGCCGGATGCGCAGGAATAATCGGCCCGAAACAACCGTAGGAGCGGGTTTAACCGCGAAGCGCCGCGCTGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGtt < 1:1675704/150‑1 (MQ=255) tGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCa > 2:1427489/1‑150 (MQ=255) gCGGACGCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGc < 2:1372976/150‑1 (MQ=255) gTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGc < 1:745902/150‑1 (MQ=255) tGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCt > 2:1924806/1‑150 (MQ=255) gAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTca > 2:1273303/1‑150 (MQ=255) aCGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcagc > 1:1282114/1‑150 (MQ=255) cGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcaaca < 1:1427489/150‑1 (MQ=255) gTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcag > 2:1455215/1‑147 (MQ=255) gTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcag < 1:1455215/147‑1 (MQ=255) tGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAAGCTCagcagc > 1:1832483/1‑150 (MQ=255) gCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt < 2:1553861/150‑1 (MQ=255) tGATAACGGATGGGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCAccc < 2:110978/150‑1 (MQ=255) tAACGGATGCGCAGGAGTAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCAA‑TCGATCTCAGACCCCCGTCGCTCGCACCGCCCTGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGt < 1:1673580/150‑1 (MQ=25) tAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGt > 2:1026400/1‑150 (MQ=255) aaCGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGt > 2:808806/1‑111 (MQ=255) aaCGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGt < 1:808806/111‑1 (MQ=255) ggATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTAc < 2:1770773/150‑1 (MQ=255) aTGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGc < 2:1274980/150‑1 (MQ=255) gcgcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACAGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGccc < 2:267767/150‑1 (MQ=255) ccgcaGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccgccgaacacctccccggcgcc > 2:1040689‑M1/2‑77 (MQ=255) cgcAGGAATAATTGGAAGGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGcccc < 2:1391136/150‑1 (MQ=255) gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGccccc > 2:1870531/1‑149 (MQ=255) cAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTc > 1:484939/1‑150 (MQ=255) aGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaa > 1:1666266‑M1/1‑73 (MQ=255) ggAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaa < 2:565988‑M1/150‑79 (MQ=255) ggAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTAccacgagctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaa < 2:1808295‑M1/150‑79 (MQ=255) gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaa > 2:1869671‑M1/1‑71 (MQ=255) gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaa < 1:1869671‑M1/84‑14 (MQ=255) gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGa > 2:1332267/1‑80 (MQ=255) gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGa < 1:1332267/80‑1 (MQ=255) gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGAACAAACC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGcc > 2:732513/1‑150 (MQ=38) aataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGAGCGGGCGGCGC‑TCGATCTCAGACCCTGAAAGCTCGCACCGCCCGGTTCAGCTCACCACCCAGGCTCAGCAGCTGTTCACCCAGTTTACGCCCCTCGCCa > 2:310197/1‑150 (MQ=255) atTGGCCCGAAACAGACGTAGTAGCGGGGTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaaatctcccggcgagcgcctcccaggcgctgaacctccacccgcgaacacctcccaggcgctgtaaacctcgc < 2:762409‑M1/150‑85 (MQ=255) atTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCGCCAGTCCAATgc > 2:1572839/1‑150 (MQ=255) ttGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaa < 1:713908‑M1/91‑27 (MQ=255) ttGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaa > 2:713908‑M1/1‑65 (MQ=255) ttGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATgcg > 2:1827628/1‑150 (MQ=255) ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGACCC‑TCGAACTAAAACCCGGAAAGCTCGCGCCGCTCGGTTCGGCGCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa > 2:1655353/1‑150 (MQ=37) cGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaac < 1:1858465‑M1/150‑92 (MQ=255) cGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCt < 2:1606669/134‑1 (MQ=255) cGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCt > 1:1606669/1‑134 (MQ=255) aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacac < 1:446775‑M1/150‑94 (MQ=255) gTAGGAGCGGGTTTACCCGCGAAGAGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgc > 2:238493‑M1/1‑49 (MQ=255) aGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaaactcccgccaaacacctaccagaca > 2:901991‑M1/1‑47 (MQ=255) gCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGt > 1:1840604/1‑150 (MQ=255) ggTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcg > 1:1855932‑M1/1‑40 (MQ=255) ccGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGt < 1:687829/98‑1 (MQ=255) ccGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGt > 2:687829/1‑98 (MQ=255) ccGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTc < 1:354295/130‑1 (MQ=255) ccGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTc > 2:354295/1‑130 (MQ=255) ccGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATc < 2:1309876/149‑1 (MQ=255) ccGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATc > 1:1309876/1‑149 (MQ=255) cgcgAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgc < 2:1377818‑M1/150‑119 (MQ=255) gcgAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcc > 1:932973‑M1/1‑31 (MQ=255) gcgAAGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcc > 1:106825‑M1/1‑31 (MQ=255) gcgAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgc > 1:616620/1‑150 (MQ=255) gagCGCCGCCCGCGCGGCGCTTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgccca > 1:539353‑M1/2‑29 (MQ=255) gagCGCCGCCCGCGCGGCGC‑TTGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgc < 1:136227‑M1/136‑110 (MQ=255) gagCGCCGCCCGCGCGGCGC‑TTGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgc < 1:136336‑M1/136‑110 (MQ=255) gagCGCCGCCCGCGCGGCGC‑TTGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgc > 2:136227‑M1/2‑28 (MQ=255) gagCGCCGCCCGCGCGGCGC‑TTGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgc > 2:136336‑M1/2‑28 (MQ=255) gaGCGCCGCCCGCGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCt < 2:760908/90‑1 (MQ=255) gaGCGCCGCCCGCGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCt > 1:760908/2‑91 (MQ=255) aGCGCCGCGCGGGCGGCGC‑TCGATCTCccaggcgctggttctctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccatt < 1:1040689‑M1/150‑124 (MQ=255) gccgcGCGGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgcc < 1:657662‑M1/150‑127 (MQ=255) gccgcGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCTCCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCtgt < 2:869230/150‑1 (MQ=255) gccgcGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCtgt > 1:676519/1‑150 (MQ=255) gccgcGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCtgt > 1:1219890/1‑150 (MQ=255) cgcgcgGGCGGCGC‑TCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgccct < 1:631450‑M1/150‑129 (MQ=255) | GCCAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGC‑TCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGG > NC_002947/652629‑652913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |