| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,130,198 | A→T | 5.1% | intergenic (‑247/+57) | gcvH‑I ← / ← PP_0990 | glycine cleavage system protein H/DoxX family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,130,198 | 0 | A | T | 5.1% | 293.9 / 5.3 | 101 | intergenic (‑247/+57) | gcvH‑I/PP_0990 | glycine cleavage system protein H/DoxX family protein |
| Reads supporting (aligned to +/- strand): ref base A (45/49); new base T (2/3); total (48/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.34e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
TTATTTATCAATAGATTACGTAAA‑TTTACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGG > NC_002947/1130049‑1130346 | ttatttatCAATAGATTACGTAAA‑TTTACTTAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTacga < 1:396962/150‑1 (MQ=255)ttatttatCAATAGATTACGTAAA‑TTTACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTacga < 2:1002901/150‑1 (MQ=255) tttatCAATAGATTACGTAAA‑TTTACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGt > 1:1319853/1‑150 (MQ=255) cAATAGATTACGTAGG‑GTCACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGa > 1:1005089/1‑150 (MQ=255) tAGATTACGTAAA‑TTTACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGTCGTAGCGaaaa < 1:1457155/150‑1 (MQ=255) tAGATTACGTAAA‑TTTACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGTCGTAGCGaaaa < 2:1660797/150‑1 (MQ=255) tAGATTACGTAAA‑TTTACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGaaaa > 1:1874199/1‑150 (MQ=255) tcGTAAA‑TTTACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCCGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATAc < 1:1229765/149‑1 (MQ=255) gTAAATTTTACGG‑GAAGCCGTATTTATTGTGTGGAATGAAATCGTTACAGGTGCCTCTGGGAGGAAAAGGGGGTGA‑GCATCAAACCCTTTTGCACCGGCGGCGAGGAGGGGGTGTATAGTTTTTGCTACGCCGTAGCGAAAACGATACaa > 2:1229765/1‑149 (MQ=255) gTAAA‑TTTACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCGTCAAACCCGTGTGCACCGACGGCGAGGAGGCTGTGTATCGATTTCGCTTCATTTTAGCGAAAACGATACAt > 1:575322/1‑150 (MQ=255) aCGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGcc > 2:134706/1‑150 (MQ=255) aaGCCGGATTTAGTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACt < 2:345239/150‑1 (MQ=255) gCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTgg < 1:1565565/150‑1 (MQ=255) ccGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGc > 1:1141659/1‑150 (MQ=255) ccGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGc < 1:1682647/150‑1 (MQ=255) ccGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGc > 1:1640454/1‑150 (MQ=255) ccGTATTTATTGTGTGGAATGATATCGTTACAGGCGCCACCGAGAGGACAAGCGCGAGA‑GCCTCAAAACCCAGAGCAGAAAAGCGTAGGGTGGGGTGCGACTGTATGGCTACGACGTAGCGAAAACGACACATGTGGTGCCTGGACTGGc > 2:688335/1‑150 (MQ=255) cGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCg > 1:176490/1‑150 (MQ=255) tatttattGTGTGGAGTGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAg < 1:1408876/150‑1 (MQ=255) tttattGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGt < 2:1141659/150‑1 (MQ=255) tgtgGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATg < 1:1199657/150‑1 (MQ=255) tgtgGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGGAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATg < 2:3938/150‑1 (MQ=255) ggAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAgg < 1:1362859/139‑1 (MQ=255) ggAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAgg > 2:1362859/1‑139 (MQ=255) ggAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGcc > 2:940505/1‑150 (MQ=255) ggAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGcc < 1:596821/150‑1 (MQ=255) ggAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGcc < 1:1121858/150‑1 (MQ=255) gAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCt > 2:727320/1‑150 (MQ=255) aaTGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCtt < 2:731173/150‑1 (MQ=255) aTGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTc < 2:1560342/150‑1 (MQ=255) tGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGGCGTAGCGAAACCAGCACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCg < 2:1006585/150‑1 (MQ=255) tGATATCGTTACAGGTCCAGCGAAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGCCGAGGAGGCTGTGTATCTTTTTCGCTACTACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCg < 1:574984/150‑1 (MQ=255) atCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCa > 1:745550/1‑150 (MQ=255) atCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCa > 1:113458/1‑150 (MQ=255) gTGCCTCTGAGAGGAAGAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGaaaa < 2:850615/92‑1 (MQ=255) gTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGaaaa < 2:1823977/92‑1 (MQ=255) gTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTc > 2:333895/1‑150 (MQ=255) tGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAACCCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCGTTGGGCATCTCACTTTca < 2:169012/150‑1 (MQ=255) tGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTca < 1:547233/150‑1 (MQ=255) tGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTca > 1:1854979/1‑150 (MQ=255) ccTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTcagc > 1:1124390/1‑150 (MQ=255) tctGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCt > 1:1491718/1‑104 (MQ=255) tctGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCt < 2:1491718/104‑1 (MQ=255) tctGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTcagcag > 1:1766620/1‑150 (MQ=255) tGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCa > 2:563395/1‑138 (MQ=255) tGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCa < 1:563395/138‑1 (MQ=255) tGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAgat < 1:940505/150‑1 (MQ=255) tGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAgat > 1:966923/1‑150 (MQ=255) agagGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAgatga < 1:299710/150‑1 (MQ=255) tggAAAAGGGTTTGC‑GCATCAGGCCTTTGTGCACCGTCGGCGAGGAGGGTGTGTATCGGTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATc < 1:31211/149‑1 (MQ=255) ggAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATcc > 2:615021/1‑150 (MQ=255) gAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGCCGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACCTCGCGAAAACCATACATCTGCTGCCTTGACTGGCGAGGTGCCAATGGCCTTCGGTCATATCACCTTCTGGAgataacccc > 2:31211/1‑144 (MQ=255) gAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCa < 1:751925/150‑1 (MQ=255) acaaGGGTTTGATGC‑TCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAg > 1:299125/3‑150 (MQ=255) aaaaGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAg < 1:1215993/150‑1 (MQ=255) aaaGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGc < 1:1139589/150‑1 (MQ=255) aaaGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGc > 1:392532/1‑150 (MQ=255) gTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTATATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGaaaa > 2:1286806/1‑150 (MQ=255) tttGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAAc > 2:376667/1‑150 (MQ=255) gCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGcc < 1:688335/150‑1 (MQ=255) tCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGgc > 1:840005/1‑150 (MQ=255) aCCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCt > 2:1872839/1‑150 (MQ=255) aCCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCt > 1:1748683/1‑150 (MQ=255) cccTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTc < 2:1874199/150‑1 (MQ=255) cTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCgg < 2:1344278/150‑1 (MQ=255) ttGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGc > 1:300503/1‑80 (MQ=255) ttGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGc < 2:300503/80‑1 (MQ=255) ttGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCggg > 1:1362951/1‑150 (MQ=255) ttGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCggg > 2:94392/1‑150 (MQ=255) ccGACGGCGAGGAGGCTGCGTATCGTTTTCGCTACGACGTAGCGAAAACGTTACATGTGGTGCCTGGCCCGGCGGGGCGTTAAGGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAg < 2:1005089/150‑1 (MQ=255) cGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAAt < 1:99827/83‑1 (MQ=255) cGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAgg > 2:883549/1‑150 (MQ=255) gACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGACGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGa > 2:764816/1‑150 (MQ=255) aCGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGCCCCTGGAGGTCCACATCGCCTTCGGTCATCTCACTTTCAGCAGATGATCCATCGAAAACGCGCCGGCGCCTCGGGCAACCAGGag < 1:134706/150‑1 (MQ=255) aCGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGag < 1:333895/150‑1 (MQ=255) ggCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGagca < 2:1124390/150‑1 (MQ=255) ggaggCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAag > 1:1192981/1‑150 (MQ=255) aggCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATg < 1:1033779/73‑1 (MQ=255) aggCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATg > 2:1033779/1‑73 (MQ=255) gCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGcc < 1:488582/150‑1 (MQ=255) gCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGcc < 1:883549/150‑1 (MQ=255) tgtgTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAAt > 1:397635/1‑68 (MQ=255) tgtgTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAAt < 2:397635/68‑1 (MQ=255) tgtgTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCt < 2:1806980/150‑1 (MQ=255) tgtATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAAc < 1:347405/129‑1 (MQ=255) tgtATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAAc > 2:347405/1‑129 (MQ=255) tCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCNcag < 2:1192981/150‑1 (MQ=255) tCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCcag < 1:727320/150‑1 (MQ=255) cGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCcagg < 2:1730497/150‑1 (MQ=255) gTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGCCAACCAGGAGCAGCAAGAGCCCTGCCcaggt < 1:1286806/150‑1 (MQ=255) ttttCGCTACGTCGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGACCTGCCcaggtc > 2:1746054/1‑150 (MQ=255) tCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCcaggtcagg < 1:819048/150‑1 (MQ=255) tACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCa < 1:7919/87‑1 (MQ=255) tACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCa > 2:7919/1‑87 (MQ=255) tACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAggtggg > 2:1838550/1‑150 (MQ=255) acgacgTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAggtgggt < 2:299125/150‑1 (MQ=255) cgacgTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAggtgggtg < 2:392532/150‑1 (MQ=255) gacgTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGgtgggtgg < 2:52786/150‑1 (MQ=255) acgTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCcaggtca < 2:421940/140‑1 (MQ=255) acgTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCcaggtca > 1:421940/1‑140 (MQ=255) | TTATTTATCAATAGATTACGTAAA‑TTTACGGAGAAGCCGTATTTATTGTGTGGAATGATATCGTTACAGGTGCCTCTGAGAGGAAAAGGGTTTGA‑GCATCAAACCCTTGTGCACCGACGGCGAGGAGGCTGTGTATCGTTTTCGCTACGACGTAGCGAAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCGCCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGG > NC_002947/1130049‑1130346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |