| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,198,339 | A→G | 5.0% | S215G (AGC→GGC) | gspE → | protein secretion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,198,339 | 0 | A | G | 5.0% | 311.1 / 3.8 | 103 | S215G (AGC→GGC) | gspE | protein secretion protein |
| Reads supporting (aligned to +/- strand): ref base A (48/48); new base G (2/3); total (51/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.35e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
TGGCCCGCCTGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGAACAGCCT > NC_002947/1198190‑1198487 | tGGCCCGCCTGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGCCGTACGACTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGAGGAG‑ATGCGCGTGCTCGACAAGCAGGCCa < 1:1789867/150‑1 (MQ=255) ccGCCTGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCct > 1:1770608/1‑150 (MQ=255) ccGCCTGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCct > 2:55585/1‑150 (MQ=255) gCCTGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCctgc > 1:1299403/1‑150 (MQ=255) ccgacgACCTTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCctgc < 1:1418581/145‑1 (MQ=255) cTGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCctgctg > 2:1640777/1‑150 (MQ=255) cTGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCctgctg > 1:1282563/1‑150 (MQ=255) tGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCTGGCctgcttg < 1:1725429/150‑3 (MQ=255) ggACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGgc > 2:1633809/1‑150 (MQ=255) aTTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCTGGCctgctt < 1:616763/144‑2 (MQ=255) aTTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCTGGCctgctt > 2:616763/1‑143 (MQ=255) aTTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTg > 2:1045723/1‑150 (MQ=255) aTTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTg < 2:605478/150‑1 (MQ=255) aGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTgg < 1:1784029/150‑1 (MQ=255) aGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTgg < 1:138306/150‑1 (MQ=255) aGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGc < 1:1455833/150‑1 (MQ=255) aGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGc < 2:1830217/150‑1 (MQ=255) ccccAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCg > 1:383871/1‑150 (MQ=255) cccAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGcc > 1:1490939/1‑148 (MQ=255) cccAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGcc < 2:1490939/148‑1 (MQ=255) cccAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCgg > 1:384669/1‑150 (MQ=255) ccAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCCGCCTACTCTCGCGGGATAACCTGGGCATGCCGGc > 2:441765/1‑150 (MQ=255) ccAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGc > 1:1319269/1‑150 (MQ=255) gACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCg < 2:1523422/150‑1 (MQ=255) gCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTAt > 1:945204/1‑150 (MQ=255) ccGCCTCACCTTGCGCGCGGCGCCGCGCCAATTGGCCGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTAtt < 2:714203/150‑1 (MQ=255) cGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTAGATAACCTGGGCATGCCGGCAGCGGTATTg > 2:1016512/1‑150 (MQ=255) cGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCACGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTg > 2:1205183/1‑150 (MQ=255) gCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACATTGACCCGCATACACGGCGAGC‑TCTAATGTATGCGCTTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGc > 1:1177912/1‑150 (MQ=255) cATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCa < 1:1816501/150‑1 (MQ=255) aTCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAg < 2:795629/150‑1 (MQ=255) aTCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTCGAG‑ATTTAGAGGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAg > 1:1553413/1‑150 (MQ=255) tCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAgg < 2:1317330/150‑1 (MQ=255) tCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAgg < 2:765328/150‑1 (MQ=255) tCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAgg < 2:1770608/150‑1 (MQ=255) aCCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGc < 1:73673/150‑1 (MQ=255) aCCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGc > 2:73673/1‑150 (MQ=255) tttGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑GTGCGCGTGCACGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCt < 2:359657/149‑1 (MQ=255) ttGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTg > 2:14256/1‑150 (MQ=255) cggcggGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGtt < 1:1640777/150‑1 (MQ=255) ggCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTgg < 1:55585/150‑1 (MQ=255) gAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCgg < 1:1158950/150‑1 (MQ=255) gAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCgg < 1:1186755/150‑1 (MQ=255) gACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCAGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAAc < 1:441765/150‑1 (MQ=255) gTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGc > 1:380921/1‑150 (MQ=255) aCGAGTCTCGACCGTGCCCGTCATCCACTGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCTTTCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCAt < 1:594710/150‑1 (MQ=255) aCGAGGCTCGACTTTGTCCGGCATCCATTGTGAGCGGGTGGTG‑ATGCGGGTGCTTGACAAGCGGGCTAGTCTGCTGGCGCTGGTTAACCTGGGGATGGCGGCAGCGGTATTGCAGGGCCTGCGCCGTTGCCTGGCGCGGCCCAACGGCAt < 2:629379/150‑1 (MQ=255) ggAGTCTCGACCTTGCCCGGCATCCACGGCTAGCGGGTGGTG‑ATGCGCGTGCTCGCCAATCGGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGNAtt < 2:1203819/149‑1 (MQ=255) gAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATtg > 2:360036/1‑150 (MQ=255) gAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATtg > 2:1158378/1‑150 (MQ=255) gTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATtgtg < 1:12403/150‑1 (MQ=255) gTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATtgtg < 1:360036/150‑1 (MQ=255) ctcGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACTGCATTGTGCt < 1:1205183/150‑1 (MQ=255) ctcGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTAGTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCt < 2:503154/150‑1 (MQ=255) tcGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCACCGGCATTGTGCTg > 2:1295642/1‑150 (MQ=255) aCCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTcc > 1:1093954/1‑150 (MQ=255) cccccGCATCCACGGCGCGCGGGTGGGG‑ATGCGCGCGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATACCCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCTTGGCGCGGCCCAACGGCATTGTGCTGTCCACCgg < 1:1272287/149‑1 (MQ=255) ccGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTTGGCATGCCGGCAGCGGTATTGCAGGGCCTCCGCAGTTGCCTGGGGCGGCCCCGCGGGATGGTGCGGTCCACCgggg > 2:286508/1‑149 (MQ=255) gCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGTCAGCCTGCTGGCGCTGGATAACCTGGGCGTGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGa < 1:1562926/150‑1 (MQ=255) cGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTc < 2:1914534/150‑1 (MQ=255) gCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCgg < 2:945204/150‑1 (MQ=255) gAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCt > 2:1136323/1‑101 (MQ=255) gAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCt < 1:1136323/101‑1 (MQ=255) gCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGCGCCTGCGCAGTTGTCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGGCCGGTTCGGGCaa > 2:1031667/1‑150 (MQ=255) gtggtg‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGAcc > 2:1708325/1‑150 (MQ=255) tg‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGa > 1:788395/1‑150 (MQ=255) g‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGAc > 2:295598/1‑150 (MQ=255) aTGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGAcc < 2:1123134/150‑1 (MQ=255) aTGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGAcc > 2:1555999/1‑150 (MQ=255) gcgcGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCtt < 1:1728377/150‑1 (MQ=255) gcgTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGt > 1:1831206/1‑150 (MQ=255) cgTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTa < 1:1045723/150‑1 (MQ=255) gCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGc > 1:1312826/1‑150 (MQ=255) tCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGc < 1:366259/114‑1 (MQ=255) tCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGc > 2:366259/1‑114 (MQ=255) tCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCa > 2:642584/1‑150 (MQ=255) tCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCa < 2:1282563/150‑1 (MQ=255) gACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTc > 1:1280879/1‑122 (MQ=255) gACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTc < 2:1280879/122‑1 (MQ=255) gACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTc > 1:1280916/1‑122 (MQ=255) gACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTc < 2:1280916/122‑1 (MQ=255) gACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGc > 1:310507/1‑150 (MQ=255) aCAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGcc > 2:718956/1‑150 (MQ=255) ccaGCAGGCTGGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCg > 1:1861763/3‑121 (MQ=255) aGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGa > 2:630649/1‑150 (MQ=255) gCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCgg > 1:285474/1‑79 (MQ=255) gCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCgg < 2:285474/79‑1 (MQ=255) gCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGaa > 1:1527780/1‑150 (MQ=255) gCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGaa < 1:1016512/150‑1 (MQ=255) cAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGcc > 1:1492104/1‑145 (MQ=255) cAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGcc < 2:1492104/145‑1 (MQ=255) cAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGCTGCCTGGCGCGGCCCAACGACATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGCCCACGACCTTCTACGCCAGCCTGAAc < 2:384669/150‑1 (MQ=255) gCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGAACAGc < 2:383871/150‑1 (MQ=255) gCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGAACAGc > 2:248022/1‑150 (MQ=255) gCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGAACAGc > 1:4089/1‑150 (MQ=255) ccAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCCGCCTGAACAGcc > 1:176866/1‑150 (MQ=255) ccAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGAACAGcc > 1:953281/1‑150 (MQ=255) cAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGAc < 2:583387/105‑1 (MQ=255) cAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGAc > 1:583387/1‑105 (MQ=255) cAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGAACAGCCt > 1:1301633/1‑150 (MQ=255) | TGGCCCGCCTGGACATTGCGGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCGCGAAGTGGACGTACGAGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTG‑ATGCGCGTGCTCGACAAGCAGGCCAGCCTGCTGGCGCTGGATAACCTGGGCATGCCGGCAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGCATTGTGCTGTCCACCGGGCCGACCGGTTCGGGCAAGACCACGACCTTGTACGCCAGCCTGAACAGCCT > NC_002947/1198190‑1198487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |