| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,269,392 | C→G | 8.0% | A16P (GCA→CCA) | PP_1109 ← | GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,269,392 | 0 | C | G | 8.0% | 313.3 / 16.0 | 100 | A16P (GCA→CCA) | PP_1109 | GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (47/45); new base G (4/4); total (51/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.64e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
CACGAAGTAGCCTCGCCCGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCTGTGTCG > NC_002947/1269243‑1269539 | cACGAAGTAGCCTCGCCCGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGc > 2:1379705/1‑150 (MQ=255)cACGAAGTAGCCTCGCCCGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGc > 1:1373575/1‑150 (MQ=255) aCGAAGTAGCCTCGCCCGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCa > 1:483452/1‑150 (MQ=255) gAANTAGCCTCGCCCGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATc > 2:1188859/1‑150 (MQ=255) tCGCCCGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGGATGCAGGCgagt < 2:1467519/150‑4 (MQ=255) tCGCCCGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGGATGCAGGCgagt < 2:1879523/150‑4 (MQ=255) tCGCCCGGGTGATGCCGTCAACACACCTTCGATGAACAGAAAGGTATCGCCTGACACGACGTCGTGGTATCGGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCTCGGGCAACCACTCGCCTGCATCCAGGCgttg > 1:1280291/1‑150 (MQ=255) gCCCGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAGGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCGTGCGTGGCCCGGGCAACCACTCGCCTGCATCCAGGCgttgtt > 2:721775/1‑150 (MQ=255) cccGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGttt > 2:859612/1‑150 (MQ=255) gTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCaaaa < 2:483452/150‑1 (MQ=255) aTGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGGATGCAGGCgag > 1:1693293/1‑136 (MQ=255) aTGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGGATGCAGGCgag < 2:1693293/138‑3 (MQ=255) gCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGt‑ga < 1:1188859/150‑1 (MQ=255) ccGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGGATGCAGGCgagtg < 1:1018528/137‑5 (MQ=255) ccGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGGATGCAGGCgagtg > 2:1018528/1‑133 (MQ=255) gTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGt‑gatga > 1:1331727/1‑150 (MQ=255) cAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAg < 2:1182803/150‑1 (MQ=255) aaCACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAgg < 2:1373575/150‑1 (MQ=255) acacCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCaaaa > 2:485772/1‑136 (MQ=255) acacCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCaaaa < 1:485772/136‑1 (MQ=255) acacCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTg > 2:539628/1‑150 (MQ=255) ccTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAg < 2:676934/150‑1 (MQ=255) cTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAgg < 2:1713542/150‑1 (MQ=255) cTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAgg < 1:283024/150‑1 (MQ=255) cTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCACCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAgg > 1:490283/1‑150 (MQ=255) ttCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAggg > 1:285963/1‑150 (MQ=255) cGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGa < 2:1331727/150‑1 (MQ=255) cGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGa < 1:812923/150‑1 (MQ=255) aCCAGCTGGGCGTAGGCCGACACGAGGTGATGGGAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATCAAGGCTGCAGGGGATCATg > 1:527661/1‑150 (MQ=255) aCCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATg > 2:645222/1‑150 (MQ=255) ccAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATgg < 1:859612/150‑1 (MQ=255) gaGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGAATTTGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGaaa < 1:18048/149‑1 (MQ=255) gCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCg < 1:448791/150‑1 (MQ=255) gCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCg < 1:1400430/150‑1 (MQ=255) cGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGt‑g > 1:9735/1‑111 (MQ=255) cGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGt‑g < 2:9735/111‑1 (MQ=255) cGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGtt > 1:821765/1‑150 (MQ=255) gACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTa < 1:351768/150‑1 (MQ=255) acacGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAg > 1:45931/1‑150 (MQ=255) cgacgTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGGCTGCTGTCGCTCTTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATCAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTCAGaaa < 2:527661/150‑1 (MQ=255) gtcgtGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGaaaaaaa > 2:501146/1‑150 (MQ=255) gtcgtGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGATT‑AAATGTTATATTAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGaaaaaaa > 2:1484285/1‑150 (MQ=255) tcgtGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGaaaaaaaa < 2:1276740/150‑1 (MQ=255) tcgtGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGATGTCCGGTCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGaaaaaaaa < 1:497758/150‑1 (MQ=255) tGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGc < 1:1707746/122‑1 (MQ=255) tGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGc > 2:1707746/1‑122 (MQ=255) ggTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGt‑gat > 1:443375/1‑99 (MQ=255) ggTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGt‑gat < 2:443375/99‑1 (MQ=255) tGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCTAAAACCGTTAGAAAAAAAAGCCTAACAGt < 1:1484285/150‑1 (MQ=255) tGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGt > 1:545141/1‑150 (MQ=255) gTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAAc < 2:45931/150‑1 (MQ=255) cACTGCAGCGGTCAGCTTGCGGATTGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACa < 1:170078/141‑1 (MQ=255) cACTGCAGCGGTCAGCTTGCGGATTGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACa > 2:170078/1‑141 (MQ=255) aCTNCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTTCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGaa > 2:1193378/1‑150 (MQ=255) aCTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGaa < 1:1584644/150‑1 (MQ=255) cTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGaaa < 1:645222/150‑1 (MQ=255) tGCCGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCCCTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAAt < 1:1914814/150‑1 (MQ=255) tCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCa < 1:1307347/93‑1 (MQ=255) tCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCa > 2:1307347/1‑93 (MQ=255) cAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGa < 1:1379705/150‑1 (MQ=255) cTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTg > 2:1815341/1‑150 (MQ=255) ttGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGACAATCATTGTCGACTgg > 2:1444015/1‑149 (MQ=255) gCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTc > 1:1683259/1‑150 (MQ=255) ggATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGt > 1:367465/1‑92 (MQ=255) ggATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGt < 2:367465/92‑1 (MQ=255) gATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATc > 1:1101481/1‑82 (MQ=255) gATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATc < 2:1101481/82‑1 (MQ=255) tGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTg > 1:2687/1‑150 (MQ=255) aGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCaa > 1:101297/1‑150 (MQ=255) gggCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACt < 2:668587/137‑1 (MQ=255) gggCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACt > 1:668587/1‑137 (MQ=255) gCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAgg > 1:594803/1‑62 (MQ=255) gCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAgg < 2:594803/62‑1 (MQ=255) gCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATg > 2:1182438/1‑150 (MQ=255) gTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGc > 2:1689909/1‑150 (MQ=255) cccGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACAt < 1:851897/150‑1 (MQ=255) ccGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCt > 1:378147/1‑116 (MQ=255) ccGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCt < 2:378147/116‑1 (MQ=255) ccGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCGAGCACATg > 2:1046404/1‑150 (MQ=255) ccGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATg > 2:420537/1‑150 (MQ=255) cGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCGGGGGATCATGGCAGGTCCGAAACCGTTAGAAATAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGc < 1:721775/150‑1 (MQ=255) ggCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCa > 2:520327/1‑150 (MQ=255) gaaacaacGCCTGGATGCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAata > 2:1371716/8‑150 (MQ=255) cACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGa > 1:997847/1‑113 (MQ=255) cACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATcc < 1:614373/150‑1 (MQ=255) cACTCGCCTGCATCCAGGCGTTGTTGCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATcc < 2:572333/150‑1 (MQ=255) acaacGCCTGGATGCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATcc > 1:1525624/5‑150 (MQ=255) cTCGCCTGCATCCAGGCGTTGTTTCAACAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCt > 1:1749974/1‑150 (MQ=255) cTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCt < 1:501146/150‑1 (MQ=255) tCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTa > 1:1523743/1‑72 (MQ=255) tCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTa < 2:1523743/72‑1 (MQ=255) tCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCtg > 1:1351120/1‑150 (MQ=255) cGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCtgt < 2:545141/150‑1 (MQ=255) gCCTGCATCCA‑GCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGAAAAGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCTACTGTTCGTTTGCAAATGGCCAACACATGCCAATAACCCttggt > 2:267042/1‑146 (MQ=255) cTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAggg > 2:1085258/1‑43 (MQ=255) cTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAggg < 1:1085258/43‑1 (MQ=255) cTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCTGTGTc > 2:245335/1‑150 (MQ=255) cTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCTGTGTc < 2:2687/150‑1 (MQ=255) tGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCTGTGTCg > 1:370202/1‑150 (MQ=255) tGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCTGTGTCg > 1:502539/1‑150 (MQ=255) | CACGAAGTAGCCTCGCCCGGGTGATGCCGTCAACACACCTTCGCTGACCAGCTGGGCGTAGGCCGACACGACGTCGTGGTAACTGAAGTCCACTGCAGCGGTCAGCTTGCGGATGGAGGGCATGCGTTGCCCGGGCAACCACTCGCCTGCATCCAGGCGTTGTTTCAAAAGGT‑GATGAAGGCTGCAGGGGATCATGGCAGGTCCGAAACCGTTAGAAAAAAAAGCCTAACAGTTAACGGAAATGCTTGTCGACTGTTCGTTTGCAAATGGCCAGCACATGCCAATATCCCTGTGTCG > NC_002947/1269243‑1269539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |