BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	1,511,112	T→A	5.0%	pseudogene (497/1851 nt)	PP_1325 ←	putative lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,511,112	0	T	A	5.0%	349.9 / 6.5	115	pseudogene (497/1851 nt)	PP_1325	putative lipoprotein
Reads supporting (aligned to +/- strand): ref base T (59/50); new base A (4/2); total (63/52)
Fisher's exact test for biased strand distribution p-value = 6.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.10e-01

Only 100 of 117 total aligned reads displayed.

TGCTGCTCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTGGGGTGGGCC  >  NC_002947/1510965‑1511261

tgctgctCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCggg                                                                                                                                                       >  1:1349996/1‑150 (MQ=255)

tgctgctCCAGGGTGCCGGAGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCCGGCAGCCAGGCGACCAAGGCCCAGATGGCGTAATTGTTGGTGCTGCCGGCCTgg                                                                                                                                                       >  2:856945/1‑150 (MQ=255)

tgatgctCCAGGGTGCCCGAGCTTTTAAAGGAGAAGGACAGGCTGGTCCAGCCAGCCAGGGTCTGATAGTTGGGTGGCTGCTGCAGTTGATCTGCAGGCAAGGAGGCGCCCAAGGCCCAGATGGCGTCCTTGTTGGTGCTGGCGGCCTgg                                                                                                                                                       >  2:1835679/4‑150 (MQ=255)

 gctgctCCAGGGTGCCGGCGCTTTTCACGGCGAAGGACAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGgc                                                                                                                                                      <  1:526448/150‑1 (MQ=255)

  ctgctCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGgcc                                                                                                                                                     >  1:1254191/1‑150 (MQ=255)

    gctCCAGCGTGCCGGCGCTTTTCACGGCAAAGGCCAGGCTGTTCCAGCGAGCCAGAGTCTGATCGTTGGTTGTCTGCTGCAGTTGCTCCACAGGCAGCTAGGCGCCCATGTCCCAGACTGGGTCATTGTTGGTGCTGGCGGCCAGcccgc                                                                                                                                                   <  2:876380/150‑1 (MQ=255)

      tCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGgccgc                                                                                                                                                   >  2:728234/1‑148 (MQ=255)

      tCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGgccgc                                                                                                                                                   <  1:728234/148‑1 (MQ=255)

      tCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCa                                                                                                                                                 >  1:1239464/1‑150 (MQ=255)

        cAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCGag                                                                                                                                               >  1:772660/1‑150 (MQ=255)

        cAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAag                                                                                                                                               >  1:625642/1‑150 (MQ=255)

            gggCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAagcagc                                                                                                                                           <  1:113111/148‑1 (MQ=255)

              gCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCgg                                                                                                                                         <  2:451748/150‑1 (MQ=255)

              gCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCgg                                                                                                                                         <  1:1747529/150‑1 (MQ=255)

              gCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCgg                                                                                                                                         <  2:1702057/150‑1 (MQ=255)

                 ggCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGc                                                                                                                                      >  2:1621384/1‑150 (MQ=255)

                  gcgcTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGcc                                                                                                                                     >  1:1397494/1‑150 (MQ=255)

                  gcgcTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGc                                                                                                                                      <  1:337502/149‑1 (MQ=255)

                  gcgcTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGc                                                                                                                                      >  2:337502/1‑149 (MQ=255)

                   cgcTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCca                                                                                                                                    <  2:1548564/150‑1 (MQ=255)

                    gcTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCcag                                                                                                                                   >  1:354994/1‑150 (MQ=255)

                      ttttCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCcagca                                                                                                                                 >  2:1895082/1‑150 (MQ=255)

                       tttCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCcagcag                                                                                                                                <  2:1239464/150‑1 (MQ=255)

                              gCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATgcgc                                                                                                                         <  1:334112/150‑1 (MQ=255)

                               cGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCgct                                                                                                                        <  1:78940/150‑1 (MQ=255)

                                      cAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGCCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGc                                                                                                                 >  2:1155355/1‑150 (MQ=255)

                                      cAGGCTGGTCCAGCCAGCCAGGGTCCGATCGTTGGTTGGCTGCTGCAGTGGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCtgtcc                                                                                                                 >  2:197055/1‑148 (MQ=255)

                                      cAGGCTGGCCCAGCCAGCCAGGGTCTGATCGTTGGTGGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCATCGGGGCCAGCAGGATGCGCTGCTGTGc                                                                                                                 <  2:463192/150‑1 (MQ=255)

                                                     agccagGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTg                                                                                                >  2:965747/1‑150 (MQ=255)

                                                      gccagGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTgg                                                                                               <  1:1659377/150‑1 (MQ=255)

                                                      gccagGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTgg                                                                                               >  1:29943/1‑150 (MQ=255)

                                                      gccagGGTCTGATCGTGGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTgg                                                                                               >  1:1807160/1‑150 (MQ=255)

                                                       ccagGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGc                                                                                              >  1:1019694/1‑150 (MQ=255)

                                                       ccagGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGc                                                                                              >  1:1907552/1‑150 (MQ=255)

                                                        cagGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGcc                                                                                             >  2:887523/1‑150 (MQ=255)

                                                         agGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGc                                                                                                                 >  1:376790/1‑131 (MQ=255)

                                                         agGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGc                                                                                                                 <  2:376790/131‑1 (MQ=255)

                                                           ggTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCgg                                                                                                                                         >  1:1039279/1‑105 (MQ=255)

                                                            gTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGGTCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCTATCg                                                                                         >  1:604209/1‑150 (MQ=255)

                                                               tGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCt                                                                                      >  1:1229653/1‑150 (MQ=255)

                                                                       ggttggCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAgcgc                                                                              <  1:1895082/150‑1 (MQ=255)

                                                                            gctgctGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCgcggcgg                                                                         >  2:1843321/1‑150 (MQ=255)

                                                                            gctgctGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCgcggcgg                                                                         >  1:1660709/1‑150 (MQ=255)

                                                                             ctgctgCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCgcggcggc                                                                        <  2:1907552/150‑1 (MQ=255)

                                                                               gctgcAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGt                                                                      <  2:1254191/150‑1 (MQ=255)

                                                                                  gcAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGca                                                                   <  2:1397494/150‑1 (MQ=255)

                                                                                      ttGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACt                                                               >  1:1012715/1‑150 (MQ=255)

                                                                                      ttGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACt                                                               >  1:707617/1‑150 (MQ=255)

                                                                                        gCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGgcc                                                                                                                                                     >  1:769365/1‑64 (MQ=255)

                                                                                        gCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGgcc                                                                                                                                                     <  2:769365/64‑1 (MQ=255)

                                                                                        gCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCATGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGt                                                             >  1:93388/1‑150 (MQ=255)

                                                                                        gCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGcacctaca                                                             <  2:1377746/150‑6 (MQ=255)

                                                                                          tctGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAg                                                           <  2:1026836/150‑1 (MQ=255)

                                                                                          tctGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGCCGGCGTGCCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAg                                                           <  1:1455658/150‑1 (MQ=255)

                                                                                            tGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGt                                                         >  2:1813505/1‑150 (MQ=255)

                                                                                            tGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGAAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGt                                                         <  2:450152/150‑1 (MQ=255)

                                                                                                   agCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAg                                                           >  2:25021/1‑141 (MQ=255)

                                                                                                    gCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCtt                                                 <  1:482501/150‑1 (MQ=255)

                                                                                                    gCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGGGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCtt                                                 >  1:1401006/1‑150 (MQ=255)

                                                                                                      gAGGCGACGAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGc                                               <  2:800610/150‑1 (MQ=255)

                                                                                                       aGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCCACCGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCa                                              <  2:1710147/150‑1 (MQ=255)

                                                                                                          cGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGt                                           <  2:707617/150‑1 (MQ=255)

                                                                                                            aCCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCACGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCGGGCCATCGGCTTTTGGCGCGGCGGCGTGCATACTGTAGGTGCGCGCTTGCAGGTCt                                         <  2:1655513/150‑1 (MQ=255)

                                                                                                            aCCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCt                                         >  2:1545989/1‑150 (MQ=255)

                                                                                                              cAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTa                                                            <  1:1233809/129‑1 (MQ=255)

                                                                                                              cAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTa                                                            >  2:1233809/1‑129 (MQ=255)

                                                                                                              cAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGc                                       >  2:1258500/1‑150 (MQ=255)

                                                                                                              cAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGAAGAATGCGCTAGCGTGAAGGAGCGACGGGACCTTG‑‑AGTGGGATCTAGCGCGGCGGCGTGAACACTGTAGGTGCGCGCTTGCATGGCTGc                                       >  1:431903/1‑150 (MQ=255)

                                                                                                                  gCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGc                                   >  2:640511/1‑150 (MQ=255)

                                                                                                                    ccAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCCACTGCGTCGAGCGCGGCGGCGGGCGGACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAg                                 >  1:1755572/1‑150 (MQ=255)

                                                                                                                    ccAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAg                                 <  1:995451/150‑1 (MQ=255)

                                                                                                                      aGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTa                                                            <  1:1302727/121‑1 (MQ=255)

                                                                                                                      aGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTa                                                            >  2:1302727/1‑121 (MQ=255)

                                                                                                                      aGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGtt                               <  1:196549/150‑1 (MQ=255)

                                                                                                                      aGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGtt                               >  1:1446723/1‑150 (MQ=255)

                                                                                                                       gATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCAACAAGCAGCGTGGCCAGCAGGATGCGCTGCTGTGCGGCAGTTA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTc                              <  1:887523/150‑1 (MQ=255)

                                                                                                                       gATGGAGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGATGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTCGGTGCGCGCTTGCAGGTCTGCCGGCAGTTc                              >  2:164771/1‑150 (MQ=255)

                                                                                                                        aTGGCGTCATTGTTGGTGATGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGGGCGCGGCGGAGTGGCCTCTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCg                             <  2:1006313/150‑1 (MQ=255)

                                                                                                                             gTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAg                        >  2:729279/1‑150 (MQ=255)

                                                                                                                              tCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAgg                       <  1:810455/150‑1 (MQ=255)

                                                                                                                              tCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAgg                       <  1:1621384/150‑1 (MQ=255)

                                                                                                                                    ttgGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACGCTGTAGGTGTGCGCTGGCGGGTCTTCCGGCATGGCGGCGAGGCGCTGc                 >  2:207356/1‑150 (MQ=255)

                                                                                                                                    ttgGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGc                 >  1:1850345/1‑150 (MQ=255)

                                                                                                                                      ggTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAg               >  2:1332193/1‑150 (MQ=255)

                                                                                                                                       tgcttGGCGGCCAGGCCGCC‑AGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGc             >  1:1392964/5‑150 (MQ=255)

                                                                                                                                       gTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCatt              <  2:1324390/150‑3 (MQ=255)

                                                                                                                                       gTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAgg              >  1:1094117/1‑150 (MQ=255)

                                                                                                                                          ttGGCGGCCAGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAg                                             <  1:1857016/115‑1 (MQ=255)

                                                                                                                                          ttGGCGGCCAGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTg           >  1:1085540/2‑150 (MQ=255)

                                                                                                                                          ttGGCGGCCAGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTg           >  2:819627/2‑150 (MQ=255)

                                                                                                                                          cTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTg           <  2:1807160/150‑1 (MQ=255)

                                                                                                                                          cTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTg           <  2:548971/150‑1 (MQ=255)

                                                                                                                                          cTGGCGGCCTGGCCGACAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTg           <  1:856945/150‑1 (MQ=255)

                                                                                                                                           tGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCgcggc                                                                           >  2:1157174/1‑85 (MQ=255)

                                                                                                                                           tGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCgcggc                                                                           <  1:1157174/85‑1 (MQ=255)

                                                                                                                                            ggcggcCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTggg         >  2:533415/1‑150 (MQ=255)

                                                                                                                                             gcggcCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGCCGAGGCGCTGCAGGCTgggg        <  1:965747/150‑1 (MQ=255)

                                                                                                                                             gcggcCTGGCCGCCAAGCAGCGGGGCCAGCAGGATCCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGccgtgg        <  2:1336315/150‑6 (MQ=255)

                                                                                                                                                  cTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTGGGGTGGGc   >  1:1593604/1‑150 (MQ=255)

                                                                                                                                                   tGGCCGCCCAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGTCGGCCA‑GGG‑CCTGAACATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTGGGGTGGGcc  >  2:1316013/1‑150 (MQ=255)

TGCTGCTCCAGGGTGCCGGCGCTTTTCACGGCGAAGGCCAGGCTGGTCCAGCCAGCCAGGGTCTGATCGTTGGTTGGCTGCTGCAGTTGCTCTGCAGGCAGCGAGGCGACCAAGGCCCAGATGGCGTCATTGTTGGTGCTGGCGGCCTGGCCGCCAAGCAGCGGGGCCAGCAGGATGCGCTGCTGTGCGGCAGCCA‑GGG‑CCTGGCCATCGGCTTCGAGCGCGGCGGCGTGCACACTGTAGGTGCGCGCTTGCAGGTCTGCCGGCAGTTCGGCGAGGCGCTGCAGGCTGGGGTGGGCC  >  NC_002947/1510965‑1511261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`