| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,576,577 | T→C | 5.5% | intergenic (‑55/+258) | galP‑II ← / ← ttgC | porin‑like protein/efflux pump outer membrane protein TtgC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,576,577 | 0 | T | C | 5.5% | 225.3 / 2.3 | 86 | intergenic (‑55/+258) | galP‑II/ttgC | porin‑like protein/efflux pump outer membrane protein TtgC |
| Reads supporting (aligned to +/- strand): ref base T (43/35); new base C (3/2); total (46/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.89e-01 | |||||||||||
AACCACCTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGC > NC_002947/1576432‑1576725 | aaCCACCTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAg > 2:1548231/1‑150 (MQ=255)aaCCACCTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAg > 2:1780062/1‑150 (MQ=255) accTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGc < 2:796576/150‑1 (MQ=255) accTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGc > 2:1631056/1‑150 (MQ=255) cTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCgg < 1:1885818/150‑1 (MQ=255) cTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCgg > 2:1336656/1‑150 (MQ=255) cTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCgg < 1:1631056/150‑1 (MQ=255) cTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTGGTTTTTATGTGCGTGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCgg < 1:332059/150‑1 (MQ=255) gTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGCGCCTGCAGTTGCTGgtgt < 2:928319/150‑1 (MQ=255) ttGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGtt > 1:1014715/1‑150 (MQ=255) ggcggcGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGtttt < 2:1688047/150‑1 (MQ=255) ggcgAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTtga < 1:953924/150‑1 (MQ=255) gcgAATGCGGGGAGGGCGCAGGACATGGCCACCAGGCCAGGCAGCAGCGGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTtgat > 2:1164412/1‑150 (MQ=255) gcgAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTtgat < 2:1533694/150‑1 (MQ=255) tctgggAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGCGACTGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAGCtt < 1:1482423/147‑1 (MQ=255) gctgAGGGCGACGGACATGCCCAACACGACACGCAGCCGATCAGATCCGAGAAGCGAAATGACAATCTGTAGTGGATATCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGa < 2:398487/147‑1 (MQ=255) ggAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGATCTCGATAAACTTGAga > 2:1482423/1‑149 (MQ=255) aGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTtgat > 1:1148012/1‑131 (MQ=255) aGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTtgat < 2:1148012/131‑1 (MQ=255) aGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGAGCTCTTGTGTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGATTTTGATGCACTGGAGTAACGT‑Tggg > 1:533677/1‑148 (MQ=255) gACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTg > 2:443315/1‑150 (MQ=255) tGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGGGGGGGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTggggg > 1:775126/1‑150 (MQ=255) ccAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTtgat < 1:1208080/122‑1 (MQ=255) ccAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTtgat > 2:1208080/1‑122 (MQ=255) aggccaggcAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGc < 1:1548231/150‑1 (MQ=255) gcagcaGCTGACGTGCGGGAAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAg > 1:1477126/1‑150 (MQ=255) agcagcTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTg > 1:1659128/1‑150 (MQ=255) gcTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCggg > 1:1481351/1‑150 (MQ=255) gtggcgggCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCgggg < 2:1477126/143‑1 (MQ=255) cTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCgggg > 1:1034974/1‑150 (MQ=255) aCGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTTGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTg < 1:862933/150‑1 (MQ=255) gTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGTCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GGGCGGGGGAGTGCGGGGGTGAg > 1:129079/1‑150 (MQ=255) gCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGc > 1:1889904/1‑150 (MQ=255) gggTAGCGAAATGCTCGTCTGTCGGGGATCTTTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCaa < 2:68644/150‑1 (MQ=255) gggaGCGAAATGCTCATGTGTCGGGGGTCTCTTGTTTTTATGGTCGGGCCGGTGCACTGCGGGAGCGGGCCTGCAGGTGCGGGTGTTTTTGATGCATTTGAGTACCGT‑GGC‑GTGGGGGG‑A‑GG‑GTGCGGGGTAGTGCGGGGGTGAGGCAAt < 2:114236/147‑1 (MQ=255) gTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAAtt > 2:29429/1‑150 (MQ=255) tAGCAAAATCCTTATCTGGGGTGGATCTTTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTc < 2:1481351/150‑1 (MQ=255) gCGAAATGCTCATTTGTCGTGGTTTTTTTGTTTTTATGGTCGGGGGGGTGCTCTGCGGGATGGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTcgc < 1:1542906/150‑1 (MQ=255) gCGAAATGCTCATCTGTCGTGGTTCTCTTTTTTTTCTGGTCAGCCCGGTGCAATGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GGGGGGGG‑A‑GG‑GTGGGGGGTAGTGCGGGGGTGAGGCAATTcgc < 1:1542225/150‑1 (MQ=255) ggAAATGCTCATTTGTGGTGGGTTTCTTGTTTTTATGGTTTAGCCGGTGCACTGCGGGATCGGGCCTGCTGGTGCGGGTGTTTTTGATAAATTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGTTTGTGCGTGGCTGAGGCAATTcgcc < 2:876411/149‑1 (MQ=255) cGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑t < 2:845795/116‑1 (MQ=255) cGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑t > 1:845795/1‑116 (MQ=255) cGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTcgcc > 1:1840588/1‑150 (MQ=255) aaTGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAAGCAATTCGCCGCa > 2:1028376/1‑150 (MQ=255) gcccATCTGTCGTGGATCTCTTTTTTTTATGGTCGAGCCGGTGCACTGCTGTATCGGGCCTGCAGGTGCGTGTGTTTTTGATGAACTTGGGTGACGT‑TGC‑GTGGGGGG‑A‑GG‑GTGCGGGGTAGGGCGGGGGTGAGGCAATTCGGCGCTaac > 2:839994/4‑150 (MQ=255) gCTCATCTGTGGTGGATCTGGTGGTTTTCTGATCGATCAAATGAAATGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGGAGTGAGGGGGTGAGGCAATTCGCCGCAaac > 2:685175/1‑150 (MQ=255) tCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTcgc > 1:1707744/1‑141 (MQ=255) tCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTcgc < 2:1707744/141‑1 (MQ=255) aTCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCggg > 1:139950/1‑114 (MQ=255) aTCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCggg < 2:139950/114‑1 (MQ=255) aTCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAaacggaa > 2:325849/1‑150 (MQ=255) tCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCCGCAGGTGCgg < 2:1612921/62‑1 (MQ=255) tCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCCGCAGGTGCgg < 2:648012/62‑1 (MQ=255) tCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCCGCAGGTGCgg > 1:1612921/1‑62 (MQ=255) tCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCCGCAGGTGCgg > 1:648012/1‑62 (MQ=255) gTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCgggg < 2:1379497/118‑1 (MQ=255) gTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCgggg > 1:1379497/1‑118 (MQ=255) ctTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGa > 1:994125/1‑150 (MQ=255) ttGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGTAAACGGTGCGTTA‑ACCG‑GATCGAGATCG‑‑‑GGGGGGGAGGCAATTCGCCGCAAACGGAACAGGGCGATAATCGaa > 1:1663130/1‑150 (MQ=255) ttGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGCACGCGGCGAtcctcgca < 2:1014715/150‑8 (MQ=255) ttGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGaa > 1:1216106/1‑150 (MQ=255) gTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGCACGGGGCGGTAATCGAACg > 2:1295698/1‑150 (MQ=255) ggTCGAGCCGGTGCACTGCGGGATCGGGCCGGCAGGTGCGGGTGTTTTTGATGAACGTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTCGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTc < 1:686303/150‑1 (MQ=255) gTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCgg < 1:501516/96‑1 (MQ=255) gTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCgg > 2:501516/1‑96 (MQ=255) tCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTcgcc > 1:1831034/1‑112 (MQ=255) tCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTcgcc < 2:1831034/112‑1 (MQ=255) tCGAGCCGGTGCACTGCGGGATCGGGCACACGTGGTCTGGTGTTTGTGATTAAGGGGAGTAAAGT‑TGC‑GGGGGGGGTA‑GGCGTGCCGAGCA‑AG‑GGTTGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATACAGGAAGGGAAGGGTCCg > 1:1876843/1‑150 (MQ=255) aGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGTGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCggtt > 1:1251776/1‑150 (MQ=255) aGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCggtt < 2:1840588/150‑1 (MQ=255) gCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCaaa > 2:1862089/1‑113 (MQ=255) gCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCaaa < 1:1862089/113‑1 (MQ=255) ccGGTGCACGGCGGGATGGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAAGGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCggttgg < 1:1759818/150‑1 (MQ=255) cGGTCCACTGCGGGTCCGGGCTGGCGGGGGGGGGTGTTTTGGATGAATTGGAGTAACGT‑GGG‑GGGGGGGG‑A‑TG‑GTGGGGGGTAGTGGGGGGGTGAGGCAATTCGCCGAAAACGGAACGGGGCGATAATCGAACGGAATGTTCCggttggt < 1:443315/150‑1 (MQ=255) ggTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCggttggtt > 1:244053/1‑150 (MQ=255) gTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGc < 2:1064531/96‑1 (MQ=255) gTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGc > 1:1064531/1‑96 (MQ=255) gCAGTGCGGGATGGGGCCGGCAGGGGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGG‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCGGTTGGTtaat < 2:1876843/150‑1 (MQ=255) accgCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAAGGT‑TGC‑GTGGGGGC‑A‑CG‑CCGGCCAGCAAACCGGGGGTGATACAATGCTCCGCAATCGGAACGGGGCGATAATCGAACGTAATGTTCCGGTTGGTtaataa < 1:1178721/147‑1 (MQ=255) tGCGGGATCGGGCCTGCAGGTTCGGGCGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGGGGCAATTCGCCGCACACGGAACGGGGCGATAATCGAACGGAATGTTCCGGTTGGCTAATAAcg > 2:671661/1‑149 (MQ=255) tGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGAAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAAct > 1:1762424/1‑150 (MQ=255) gATGGGGCCTGCAGGTGCGGGTGTTTTTGATGAGTTTGAGTAACTT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGGAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATTGAACGGAATGTTCCGGTTGGTTAATAACtcttct < 1:1780062/150‑1 (MQ=255) gATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAAGGTTCCGGTTGGTGAATAACtcttct > 1:943230/1‑150 (MQ=255) aTCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAaacg > 2:1710314/1‑99 (MQ=255) aTCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAaacg < 1:1710314/99‑1 (MQ=255) cTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑C‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTATGGggcggc > 1:608358/1‑150 (MQ=255) | AACCACCTTCGTTGGCGGCGAATGCGGGGAGGGCGCAGGACATGGCCAACAGGCCAGGCAGCAGCTGACGTGCGGGTAGCGAAATGCTCATCTGTCGTGGATCTCTTGTTTTTATGGTCGAGCCGGTGCACTGCGGGATCGGGCCTGCAGGTGCGGGTGTTTTTGATGAACTTGAGTAACGT‑TGC‑GTGGGGGG‑A‑TG‑GTGCGGGGTAGTGCGGGGGTGAGGCAATTCGCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGC > NC_002947/1576432‑1576725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |