| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,683,290 | C→G | 8.0% | intergenic (+57/‑174) | recJ → / → PP_1478 | ssDNA‑specific exonuclease RecJ/xenobiotic reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,683,290 | 0 | C | G | 8.0% | 187.2 / 4.9 | 64 | intergenic (+57/‑174) | recJ/PP_1478 | ssDNA‑specific exonuclease RecJ/xenobiotic reductase |
| Reads supporting (aligned to +/- strand): ref base C (26/31); new base G (2/3); total (28/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
GCTGGGTGGAGTTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGA > NC_002947/1683142‑1683433 | gcTGGGTGGAGTTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGccgccc > 2:1292951/1‑150 (MQ=255) tGGAGTTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCgcgg > 2:77073/1‑150 (MQ=255) ggAGTTGGCGTACAAGCTGGATGTGAGCGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCgcggc < 1:1840389/150‑1 (MQ=255) aGTTGGCGTACAATCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGGGCCGCGCTGAGGGTCCCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCATAAATCGA‑GCGCCGCGCGGGCGgcgc < 1:521511/150‑1 (MQ=38) gtcggCGTACAAGCTGGAGGTGAACGAGTTTCGCGGCAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCt < 1:758028/147‑1 (MQ=255) gTTGGCGTACAAGCTGTATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTCAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCCCCGCCCGCGCGGCGCt < 2:975456/150‑1 (MQ=255) gTTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCGCGGGCGGCGCt < 2:161155/150‑1 (MQ=255) ggCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGa > 1:1441696/1‑150 (MQ=255) gCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGAt < 1:77073/150‑1 (MQ=255) gTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGAtct > 1:569091/1‑150 (MQ=255) aCAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGCGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTca < 2:87577/150‑1 (MQ=255) aCAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCACATAGTCCAACCCTATTTGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTca < 2:529425/150‑1 (MQ=37) tGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGgcg > 2:1431907/1‑150 (MQ=255) ggaCGAGTTGGGCGGTAAGGAGAGTGGGCAGTTGATGAGTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAAGCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCaaa < 2:189202/148‑1 (MQ=39) gAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGGGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCaaa > 1:1501861/1‑150 (MQ=255) aaCGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAAc > 2:474958/1‑150 (MQ=255) aaCGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAAc < 1:1361233/150‑1 (MQ=255) aGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCttt < 2:1689381/150‑1 (MQ=255) gTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTc < 2:877689/150‑1 (MQ=255) gcgGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGa > 2:1329006/1‑150 (MQ=255) cgGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGaa < 1:1211469/150‑1 (MQ=255) cgGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGaa < 1:1875067/150‑1 (MQ=255) agagTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGc > 2:847896/1‑150 (MQ=255) agagTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGc < 1:1700283/150‑1 (MQ=255) ttGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAACGGG‑GGGCCGCCCGCGCGGCGCTCGATCACACCGACGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGa > 1:887659/1‑150 (MQ=255) ttGCGCATATGGAGCCGCGCTGGGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTccc < 2:1501861/150‑1 (MQ=255) ttGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTccc < 2:848016/150‑1 (MQ=255) ttGCGCATATGGAGCCGCGCTGAGTTTAGCGACGAGGGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTccc > 1:1401356/1‑150 (MQ=255) gcgcATATGGAGCCGCGCTGATTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTccccc > 2:10723/1‑150 (MQ=255) gcgcATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTccccc < 1:1329006/150‑1 (MQ=255) gcgcATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTccccc > 2:281739/1‑150 (MQ=255) atatGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCccacc > 1:296550/1‑150 (MQ=255) gAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCt > 2:537022/1‑150 (MQ=255) gCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGCCACACTTCGG‑GTTCCGCATTCGCGTGTTTTACACTCACAGGCGCTGCAACCCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTgg < 1:1875388/150‑1 (MQ=255) gCCGCGCCTCGTTTAGCGTCCGGTGCCTGCCTTGGCTCTTGCGCTGGGGCACACAACAACGGGGAGATC‑CCCCGCGCGCCATCTCACAGTCGCTGCAAACCTTCCGCCTAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTgg < 1:1875374/150‑1 (MQ=255) ccGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGt < 1:537022/150‑1 (MQ=255) ccGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGt < 2:1441696/150‑1 (MQ=255) gcTTAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAg > 2:889515/1‑150 (MQ=255) cTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGt > 1:1883284/1‑150 (MQ=255) tttAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTc < 1:644596/94‑1 (MQ=255) tttAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTc > 2:644596/1‑94 (MQ=255) tttAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCAt < 2:1478194/150‑1 (MQ=255) aGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTaa < 2:1883284/150‑1 (MQ=255) tCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGAc > 1:689649/1‑150 (MQ=255) cAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGAcc < 1:474958/150‑1 (MQ=255) aGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCTGGCTCGCGGCGATCGATCCCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCg > 2:367251/1‑150 (MQ=255) aGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGAc > 2:1024756/1‑148 (MQ=255) aGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGAc < 1:1024756/148‑1 (MQ=255) aGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCg > 1:1301388/1‑150 (MQ=255) tgcctgccTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCa > 1:1443841/1‑150 (MQ=255) tacattGGCTCTTGCGCTTGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCgg > 2:1662850/5‑150 (MQ=255) tGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACATTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGAtgtg < 2:689649/150‑1 (MQ=255) gcTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGc < 1:1145404/148‑1 (MQ=255) gcTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGc > 2:1145404/1‑148 (MQ=255) gcTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCAc < 2:296550/150‑1 (MQ=255) ggCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAg < 2:1443841/150‑1 (MQ=255) cacaAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTTGCTATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAgtg < 1:33745/150‑1 (MQ=255) cacaAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGc < 2:1344660/130‑1 (MQ=255) cacaAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGc > 1:1344660/1‑130 (MQ=255) aaaTCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTcc > 1:67421/1‑150 (MQ=255) aaaTCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCACGGATGTGCACtt < 1:1759249/142‑1 (MQ=255) aaaTCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCACGGATGTGCACtt > 2:1759249/1‑142 (MQ=255) cGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGc < 1:847896/150‑1 (MQ=255) a‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAAt > 1:549956/1‑107 (MQ=255) a‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAAt < 2:549956/107‑1 (MQ=255) ccccgccagcGCGGCGCTCGATCTCACAGGCGCTGCACAAATTTCCGCAAACCCCTGGCCATCCCACAGACCTTGACCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGa < 1:889515/148‑1 (MQ=255) gccgccCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCgg > 1:158550/1‑110 (MQ=255) gccgccCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCgg < 2:158550/110‑1 (MQ=255) | GCTGGGTGGAGTTGGCGTACAAGCTGGATGTGAACGAGTTTCGCGGTAATGAGAGTGTGCAGTTGATGATTGCGCATATGGAGCCGCGCTGAGTTTAGCGTCAGGTGCCTGCCTTGGATCTTGCGCTGGGGCACAAATCGA‑GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCTGCAAACCTTTCGGCGAACCCCTCGCCATCCCACAGAACCTCCCCCCACCAATCTGGTCTAGTCTCATTAATGACCGGCACCGGGCCAGGGATGTGCACTTGAGTGTCCGGGCCGGA > NC_002947/1683142‑1683433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |