| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,732 | A→C | 5.5% | N413T (AAC→ACC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,732 | 0 | A | C | 5.5% | 414.7 / 11.8 | 146 | N413T (AAC→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (69/68); new base C (3/5); total (73/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.70e-01 | |||||||||||
Only 100 of 149 total aligned reads displayed.
CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGC > NC_002947/195583‑195878 | cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 1:1065841/150‑1 (MQ=255)cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 1:271340/150‑1 (MQ=255)cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 2:1218985/150‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 2:33955/150‑1 (MQ=255) aTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCCGGCCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCATGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGt < 1:959341/150‑1 (MQ=11) tCCGACCCCGGCTCAGACCACGATCAACGACACCGTCAACGCCACCACCGCGAACCGAGCGTCAAACCCGGCGGACACCGCAGGCGGCGTGATCACT‑TACACCAAGACCCTGAGCAACCCTGCCCCGACGCCGGTAACCGTGAACCTGTc > 2:428761/1‑150 (MQ=14) ccccGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACAGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 1:891229/150‑1 (MQ=255) ccccGGCTCAGACCACGATCAACGACTAGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCCGTCCAACg < 1:315093/150‑1 (MQ=255) cGGCTCAGACCACGATCAACGACTCGGTCGATACCACCACCGCGACCCTGACGACAAGCCCATCGCACACGTCAGGCCGCCTGAT‑ACTCTACACCATGACGTTTAGCAAGCCTGCCCAGAAGCCAAAAACCGTGACCCTGTCCAACAGcc > 1:480811/1‑150 (MQ=0) tCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc < 1:796993/150‑1 (MQ=255) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa < 1:529885/150‑1 (MQ=255) aGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa < 2:534114/150‑1 (MQ=255) aCCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAtt > 2:1081428/1‑150 (MQ=255) ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa < 2:1089135/150‑1 (MQ=255) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAc > 2:1233856/1‑150 (MQ=255) ccGATCAACGCCTCGCTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAcc < 1:363700/149‑1 (MQ=255) gATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGt > 2:1666913/1‑150 (MQ=255) aTCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 1:1173377/1‑150 (MQ=255) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTAc < 2:1863761/142‑1 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAg > 2:1478125/1‑150 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAg > 2:336835/1‑150 (MQ=255) gACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg > 1:308003/1‑150 (MQ=255) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:315470/150‑1 (MQ=255) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 1:1478125/150‑1 (MQ=255) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:693399/150‑1 (MQ=255) aCTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:63804/150‑1 (MQ=255) gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaa > 2:905857/1‑150 (MQ=255) gTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCt < 1:1737875/113‑1 (MQ=255) accactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg > 2:1681798/1‑150 (MQ=255) ccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg < 2:499089/150‑1 (MQ=255) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAAc < 2:1602753/120‑1 (MQ=255) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAAc > 1:1602753/1‑120 (MQ=12) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg < 1:253031/150‑1 (MQ=40) ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGc < 1:564513/113‑1 (MQ=9) ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGc > 2:564513/1‑113 (MQ=9) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAg < 2:1173377/150‑1 (MQ=255) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTc < 2:1585554/150‑1 (MQ=255) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTc > 1:1563982/1‑150 (MQ=255) gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAATCGTCAGCCTGTTAAGCGGGTAAAACCCAGGGCAGCGTCGa > 2:152360/1‑150 (MQ=14) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTAACCCTGAGCAACAGTGCCCAGGCGCCGGTGGCAATGAACCTGTCCAACGGCCAAACGATTACGGTTGAAGCGGGTATAAACCAGGAGAGCGTCGATTTc > 2:1055573/1‑150 (MQ=11) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTcc > 1:792030/1‑150 (MQ=255) gCGAGCCCGTCGGTCACCGAAGGCGGCGTGAGCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGAcc > 2:1059451/1‑150 (MQ=255) aGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 1:1907957/150‑1 (MQ=40) tCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 2:1328098/150‑1 (MQ=255) tCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACg > 1:1339313/1‑150 (MQ=255) tCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAacgacg < 1:1666913/150‑1 (MQ=255) aCCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCg > 1:1189225/1‑121 (MQ=255) aCCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTc > 1:1272334/1‑129 (MQ=255) ccGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTAAACCTGTCCAGCGGCCAAACGAGGACCGTGGAAGCGGGTAAAACCCAGGGCAGCGTTGATTTACGAACCCCGGCCAATGACGTCt > 1:1039251/1‑150 (MQ=14) cGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg > 1:759314/1‑101 (MQ=255) cGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:759314/101‑1 (MQ=255) cGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAGCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTa > 1:1263540/1‑150 (MQ=255) cGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGACAAACAATTAATGTTTAATCTGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTa > 1:697875/1‑150 (MQ=14) gggTGATCACT‑TACCCCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAGTAATTACTGTTGAATCGGGTAAAACCCAGGGCAGAGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACg < 2:938946/148‑1 (MQ=14) gcgTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa < 1:1815665/96‑1 (MQ=255) gcgTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa > 2:1815665/1‑96 (MQ=255) gATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCg < 2:790929/107‑1 (MQ=255) tCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:1092572/87‑1 (MQ=255) tCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg > 1:1092572/1‑87 (MQ=255) tCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGa < 2:1396817/150‑1 (MQ=255) cctACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 2:1401878/57‑1 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc > 2:160481/1‑79 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc < 1:160481/79‑1 (MQ=255) acCGTGACCCTGAGCAACCCTGCGCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCGAACGATTACCGTTGAAGCGGGTAAAACCCAGGCCAGCGTCGATTTCCAGACCCCGGCCAATGACATCTACAACAACGGCTCGACCGTCAGc > 2:861124/1‑150 (MQ=255) acCGTGACCCTGAGCAACCCTGCCCAGACTCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCAAATGACGTCTACAACAACGGCTCGACCGTCAGc > 1:530425/1‑150 (MQ=255) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGc > 2:521067/1‑150 (MQ=255) cGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc > 2:299206/1‑121 (MQ=39) cGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGACTGCGATGCATGGCATCGTCTTTTGCCAGACCCACACAAAAGACGTCTACTACAGCGGCTCTACCGTCAGCGt > 1:974758/1‑150 (MQ=9) ccTGAGCAACCCTGCCCAGAGGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCAt > 1:963087/1‑150 (MQ=255) ccTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCa > 1:1618419/1‑140 (MQ=255) ccTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCa < 1:347552/140‑1 (MQ=255) ccTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTCGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaa < 2:408005/123‑1 (MQ=38) ccTGAGCAACCCTGCCCAGACGCCGATAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGCCTACAACCACGGCTCGACCGTCAGCGTCACCAt > 2:253494/1‑150 (MQ=255) gCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCgaga < 1:460787/150‑1 (MQ=255) cAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGagag > 1:1750347/1‑150 (MQ=40) aaCCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACTGTTGAAGCGGGTACAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAgc < 2:1031408/150‑1 (MQ=255) cccTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 1:653324/68‑1 (MQ=255) cccTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCa < 1:1635066/90‑1 (MQ=255) ccTGCCCAGACGCCGGTCACCGTGAGCGTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGcc > 2:1113551/1‑150 (MQ=12) ccTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAGCGcc > 1:105676/1‑150 (MQ=18) cTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCa > 1:1794442/1‑150 (MQ=39) cTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCa < 2:1756426/150‑1 (MQ=38) cccAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAGGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTg < 1:1087791/150‑1 (MQ=38) cAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTggc < 2:308003/150‑1 (MQ=255) cAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTggc > 1:1424711/1‑150 (MQ=255) aGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCATCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGTCCGTCAGCGTCACCATCGAGAGCGCCACTggcg < 1:152360/150‑1 (MQ=255) gACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGa > 2:158474/1‑48 (MQ=255) gCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCaa < 2:1137462/150‑1 (MQ=255) cGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa > 2:1634378/1‑54 (MQ=255) ggTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACg > 1:128947/1‑104 (MQ=38) ggTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACg < 2:128947/104‑1 (MQ=38) aCCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGaa < 1:905857/150‑1 (MQ=255) aCCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGaa < 2:792030/150‑1 (MQ=40) ccGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGc < 2:931652/79‑1 (MQ=39) ccGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTCCGAAc > 2:1060083/1‑150 (MQ=255) cGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa > 2:60658/1‑51 (MQ=40) cGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg > 2:162204/1‑52 (MQ=40) cGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 1:162204/52‑1 (MQ=40) gTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCt < 1:1896789/100‑1 (MQ=37) gTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCt > 2:1896789/1‑100 (MQ=37) | CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACT‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTTCGAACAGC > NC_002947/195583‑195878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |