| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,306 | T→C | 17.4% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,306 | 0 | T | C | 17.4% | 249.2 / 40.3 | 119 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (45/53); new base C (8/13); total (53/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.31e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.61e-01 | |||||||||||
Only 100 of 122 total aligned reads displayed.
CGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGC > NC_002947/196162‑196455 | cGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGc < 2:366222/150‑1 (MQ=40)cGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGc < 1:1186764/150‑1 (MQ=255) gAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGc < 2:455913/140‑1 (MQ=40) gAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGc > 1:455913/1‑140 (MQ=255) tGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAg < 1:1431576/150‑1 (MQ=40) ccccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATc > 2:1895173/1‑126 (MQ=37) ccccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATc < 1:1895173/126‑1 (MQ=37) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 1:435055/1‑150 (MQ=255) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 1:766079/1‑150 (MQ=40) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 1:689281/1‑150 (MQ=255) cGAACCCGACGCCGGCTCAGACCACGATCAACGACGCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAccc > 1:1476347/1‑150 (MQ=255) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGAGACACTGACCCttggc > 1:653314/1‑146 (MQ=255) gACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc < 2:919080/142‑1 (MQ=255) gACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 1:919080/1‑142 (MQ=255) aCGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAAc < 1:1801409/150‑1 (MQ=255) aCGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTACCCAGACGCCGGTGACAGTGACCCTGTCCAAc < 2:980491/150‑1 (MQ=255) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACga > 1:298722/1‑149 (MQ=39) ccGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGTATGCAGAGAGCT‑ATTCATCAAATGCTCGCTGAGCTATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACTGc > 1:696869/1‑150 (MQ=2) ccGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGc < 2:1266069/150‑1 (MQ=255) ccGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGc < 1:1838285/150‑1 (MQ=255) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAccc > 2:73448/1‑138 (MQ=21) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAccc < 1:73448/138‑1 (MQ=25) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAccc > 2:505648/1‑138 (MQ=21) cTCAGACCACGATCAACGACTCGGTCGACACCGCTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa > 2:1072030/1‑150 (MQ=255) cTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa < 1:1072030/150‑1 (MQ=255) cTCAGACCACGATCAACGACTCGGTCGAAACCACTACCGCGACCCTGACGGCGAACCAGTCGCTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa < 1:312425/150‑1 (MQ=255) ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 1:1473330/138‑1 (MQ=255) ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg > 2:1473330/1‑138 (MQ=255) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc < 2:689281/150‑1 (MQ=255) aCGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa > 2:487494/1‑120 (MQ=17) aCGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 1:487494/120‑1 (MQ=21) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 1:1283226/150‑1 (MQ=40) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 1:1337527/150‑1 (MQ=255) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc > 1:663348/1‑144 (MQ=40) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc < 2:663348/144‑1 (MQ=40) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 2:426610/150‑1 (MQ=40) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 2:583037/150‑1 (MQ=39) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg > 1:1762086/1‑150 (MQ=255) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTTACCCTGTCCAACGGCCAAACCATTACCGCTGAAGCCg < 1:833342/150‑1 (MQ=255) aCTCGGTCGACAATACCACCGCGACCCTGACGGCAAGCCCGTCTGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAGCCTGTCCAACGTCCGAACCATTACCGTTGCAGCCg > 1:1005243/1‑150 (MQ=11) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTG‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg > 2:1091760/1‑150 (MQ=255) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 2:953682/142‑1 (MQ=255) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt > 1:953682/1‑142 (MQ=255) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 1:621225/150‑1 (MQ=255) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 2:171528/150‑1 (MQ=40) tCGGTCGACACCACTACCGCGACCCTGACGGCCAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc > 2:828374/1‑150 (MQ=255) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa < 2:659117/150‑1 (MQ=40) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa > 1:389041/1‑150 (MQ=255) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaaga > 2:196113/1‑148 (MQ=38) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACTGTTGAAGCCGGCAAGAcc > 2:1523739/1‑150 (MQ=255) acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAccc > 2:1219812/1‑150 (MQ=25) caccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCa > 2:1380681/1‑150 (MQ=18) ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGCCCAACGGCCAAACCATTCCCGTTGAAGCCGGCAAGACCCAgg < 2:245759/150‑1 (MQ=12) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCt > 1:434829/1‑105 (MQ=35) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCt < 2:434829/105‑1 (MQ=38) accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGGTCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCATACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGc > 1:938768/4‑150 (MQ=11) cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCa > 1:523246/1‑150 (MQ=11) tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAg > 1:1045731/1‑150 (MQ=14) tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCaa < 1:468512/108‑1 (MQ=2) tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCaa > 2:468512/1‑108 (MQ=2) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTC‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGCCCGTCCCCCTGTCCAACCGCCAAACCATTACCGTCGAAACCCGCAAAACGCAGGGcccctt > 2:366220/1‑145 (MQ=11) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 1:507659/150‑1 (MQ=255) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 1:101192/150‑1 (MQ=255) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGACCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 2:1258043/150‑1 (MQ=11) gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa < 2:391925/150‑1 (MQ=12) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 2:1598389/121‑1 (MQ=33) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc < 1:843180/150‑1 (MQ=255) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CTCCGTGACCCTGAGCAATCCTCCCCAGACGCCGGTAACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGACGCTTCCAAAACCCAGGGCAGCGTCGATTTcc < 1:528263/150‑1 (MQ=11) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAACCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc > 2:1697808/1‑150 (MQ=25) gACGGCGAGCCCGTCGGTCACCTAGAGCGGCGTGATCACTTA‑CACCGTGACCCTCAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAACACCCAGGGCAGCGTCGACTTCCa < 2:951971/150‑1 (MQ=11) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 2:1802758/150‑1 (MQ=11) cccGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGc < 1:1254558/150‑1 (MQ=11) cGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa < 2:288985/133‑1 (MQ=255) cGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa > 1:288985/1‑133 (MQ=9) aCCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc < 1:1588505/68‑1 (MQ=35) aCCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg > 2:491193/1‑103 (MQ=33) aCCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg < 1:491193/103‑1 (MQ=33) aCCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 1:1697808/150‑1 (MQ=34) cGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc > 1:757273/1‑100 (MQ=34) cGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc < 2:757273/100‑1 (MQ=34) cGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg > 1:451068/1‑114 (MQ=37) cGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg < 2:451068/114‑1 (MQ=37) cGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 2:1281291/1‑150 (MQ=255) cGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 1:53293/1‑150 (MQ=11) cggcgTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 1:86528/150‑1 (MQ=34) ggcgTGATCACTTC‑CACCGTGACCATGAGCACCCCCGCCCAGTAGACGGCGACCGTGACCCTGTCCAACGGCCAAAAGATGACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGACGAGTGACGACTACaacaac > 2:27895/1‑150 (MQ=11) gcgTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 2:1201510/1‑59 (MQ=38) gcgTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc < 1:1201510/59‑1 (MQ=38) gATCACTTA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:1465176/150‑1 (MQ=255) tCACTTA‑CACCGTGACACTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCCACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa > 1:1650610/1‑150 (MQ=11) ttA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 2:1390083/1‑148 (MQ=34) ttA‑CACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 2:1889026/1‑150 (MQ=11) tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg > 2:1638874/1‑150 (MQ=38) gCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgaga < 1:55794/150‑1 (MQ=39) cAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGCCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGaa < 1:1091760/150‑1 (MQ=255) aTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 2:73364/128‑1 (MQ=34) aTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 1:73364/1‑128 (MQ=33) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga > 1:817431/1‑144 (MQ=38) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGc > 1:371685/1‑150 (MQ=39) tCCTGCCCAGACGCCGGTGACAGTGACCATGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga < 2:817431/144‑1 (MQ=38) | CGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTA‑CACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGC > NC_002947/196162‑196455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |