Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,763,724 C→A 5.6% A8A (GCC→GCA)  PP_1572 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,763,7240CA 5.6% 309.4 / 4.1 98A8A (GCC→GCA) PP_1572hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (41/51);  new base A (4/2);  total (45/53)
Fisher's exact test for biased strand distribution p-value = 4.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 106 total aligned reads displayed.

GCGCCGTTTATGCGCCCAGCCCTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGAACTACCTGACGGGCC  >  NC_002947/1763579‑1763872
                                                                                                                                                 |                                                                                                                                                    
gcgcCGTTTATGCGCCCAGCCCTGGCCGACAGCATCAGCGAGGTGACCCGTTACGTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGgcctgcc                                                                                                                                                  >  1:49338/1‑150 (MQ=255)
 cgcCGTTTATGCGCCCAGCCCTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGgcctgcct                                                                                                                                                 >  2:231166/1‑150 (MQ=255)
  gcCGTTTATGCGCCCAGCCCTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGcctgcctg                                                                                                                                                >  2:1478589/1‑150 (MQ=255)
        tATGCGCCCAGCCCTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGc                                                                                                                                          <  2:1523413/150‑1 (MQ=255)
           gcgcCCAGCCCTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCt                                                                                                                                       >  1:1237247/1‑150 (MQ=255)
               ccAGCCCTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCGATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCg                                                                                                                                   >  2:1319868/1‑150 (MQ=255)
                 aGCCCTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCCGCCAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTg                                                                                                                                 >  2:153145/1‑150 (MQ=255)
                  gCCCTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGa                                                                                                                                <  2:1223003/150‑1 (MQ=255)
                   cccTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCaga                                                                                                                                            <  1:1123169/137‑1 (MQ=255)
                   cccTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCaga                                                                                                                                            >  2:1123169/1‑137 (MQ=255)
                   cccTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTAACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGAc                                                                                                                               >  1:64518/1‑150 (MQ=255)
                    aatGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGAACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACa                                                                                                                              >  2:1322701/3‑150 (MQ=255)
                     cTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAg                                                                                                                             >  1:824178/1‑150 (MQ=255)
                      tGGCCGACAGCTTCTGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGCCCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAgc                                                                                                                            <  1:1523260/150‑1 (MQ=255)
                          cGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCa                                                                                                                                              >  1:1601607/1‑128 (MQ=255)
                          cGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCa                                                                                                                                              <  2:1601607/128‑1 (MQ=255)
                                cATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGc                                                                                                                  >  1:70367/1‑150 (MQ=255)
                                  tCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGt                                                                                                                <  1:482225/150‑1 (MQ=255)
                                    aGCGAGGTGACCAATACCGTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGTAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCgctgc                                                                                                                       >  1:948700/1‑141 (MQ=255)
                                    aGCGAGGTGACCAATACCGTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGTAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCgctgc                                                                                                                       <  2:948700/141‑1 (MQ=255)
                                     gCGAGGTGCCCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCACCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGCGCCCTGCCGTGACAGCGCTGCTTGGCGTCgg                                                                                                             >  2:1464134/1‑150 (MQ=255)
                                     gCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCgg                                                                                                             >  1:875416/1‑150 (MQ=255)
                                          gTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCg                                                                                                        >  2:209535/1‑150 (MQ=255)
                                           tGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCgg                                                                                                       >  2:1750139/1‑150 (MQ=255)
                                            gACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGc                                                                                                      <  1:1566517/150‑1 (MQ=255)
                                             aCCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAgcgc                                                                                                                          <  2:662323/129‑1 (MQ=255)
                                             aCCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAgcgc                                                                                                                          >  1:662323/1‑129 (MQ=255)
                                             aCCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGAAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCa                                                                                                     <  1:237821/150‑1 (MQ=255)
                                                  tACCTTCGTCACCGAGTACGAGAAGTCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGt                                                                                                >  2:236293/1‑150 (MQ=255)
                                                  tACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGACAAGCAGCAAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGt                                                                                                <  2:1846542/150‑1 (MQ=255)
                                                    ccTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGtct                                                                                              <  1:412020/150‑1 (MQ=255)
                                                     cTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCaga                                                                                                                                            <  2:1428788/103‑1 (MQ=255)
                                                     cTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCaga                                                                                                                                            >  1:1428788/1‑103 (MQ=255)
                                                     cTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGtctc                                                                                             >  2:1630716/1‑150 (MQ=255)
                                                     cTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTCGGCGTCGGCACCGGCATGCGtctc                                                                                             <  2:1283619/150‑1 (MQ=255)
                                                       tCGTCACCGAGTACGAGAAGGCGATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTa                                                                                           <  1:1319868/150‑1 (MQ=255)
                                                       tCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTa                                                                                           <  2:1178594/150‑1 (MQ=255)
                                                          tCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTc                                                                                        >  1:1113747/1‑150 (MQ=255)
                                                            aCCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGt                                                                                      >  1:10955/1‑150 (MQ=255)
                                                              cGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGttt                                                                                    >  2:274303/1‑150 (MQ=255)
                                                               gAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCctgcctgc                                                                                                                                               <  1:1721254/90‑1 (MQ=255)
                                                               gAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCctgcctgc                                                                                                                                               >  2:1721254/1‑90 (MQ=255)
                                                               gAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTCACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTg                                                                                   <  1:366710/150‑1 (MQ=255)
                                                                 gTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTggg                                                                                 <  2:1237247/150‑1 (MQ=255)
                                                                 gTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTggg                                                                                 <  1:1478589/150‑1 (MQ=255)
                                                                 gTACGAGAAGGCAATAGACAGCGCCACCCGGCGAGCAGAGAAAACGGCAGCCAGCTCATGACACCCCCAATTATGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTggg                                                                                 <  2:1842099/150‑1 (MQ=255)
                                                                  tACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGtctc                                                                                             <  2:259008/137‑1 (MQ=255)
                                                                  tACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGtctc                                                                                             >  1:259008/1‑137 (MQ=255)
                                                                  tACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTgggg                                                                                <  1:314002/150‑1 (MQ=255)
                                                                     gagaAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAgg                                                                             <  2:64518/150‑1 (MQ=255)
                                                                     gagaAGGCAACCGACCGCGCAACCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAgg                                                                             <  2:875416/150‑1 (MQ=255)
                                                                      agaAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGc                                                                            <  2:512379/150‑1 (MQ=255)
                                                                          ggCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCagag                                                                        <  2:1254231/150‑1 (MQ=255)
                                                                           gCAATCGCCCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGc                                                                       <  2:779441/150‑1 (MQ=255)
                                                                             aaTCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAg                                                                     >  1:1700634/1‑150 (MQ=255)
                                                                             aaTCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAg                                                                     >  2:1887662/1‑150 (MQ=255)
                                                                             aaTCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAg                                                                     >  2:1353455/1‑150 (MQ=255)
                                                                              aTCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAgg                                                                    >  1:1888140/1‑150 (MQ=255)
                                                                               tCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGATCATGACCACACCAATTGGCTAGGCCTCCATCTCACGCCCGGCGGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAggg                                                                   >  1:1672238/1‑150 (MQ=255)
                                                                                   ccGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCag                                                                                                                                             <  2:779410/72‑1 (MQ=255)
                                                                                   ccGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCag                                                                                                                                             >  1:779410/1‑72 (MQ=255)
                                                                                     gcgcCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGc                                                             >  1:906286/1‑150 (MQ=255)
                                                                                        ccATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCaa                                                          >  2:545404/1‑150 (MQ=255)
                                                                                        ccATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCaa                                                          <  2:90775/150‑1 (MQ=255)
                                                                                          aTCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGttt                                                                                              <  1:66284/112‑3 (MQ=255)
                                                                                          aTCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGc                                                        >  2:591236/1‑150 (MQ=255)
                                                                                          aTCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGc                                                        >  2:1283713/1‑150 (MQ=255)
                                                                                          aTCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGc                                                        >  2:1813668/1‑150 (MQ=255)
                                                                                          aTCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCATGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGtct                                                                                              >  2:66284/1‑112 (MQ=255)
                                                                                          aTCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCATGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGc                                                        >  2:1022132/1‑150 (MQ=255)
                                                                                           tCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTTGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGcc                                                       <  1:70872/150‑1 (MQ=255)
                                                                                             cGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCat                                                     <  1:1750139/150‑1 (MQ=255)
                                                                                                   gcagcGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCgg                                               <  2:171753/150‑1 (MQ=255)
                                                                                                     agcGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTc                                             <  1:153145/150‑1 (MQ=255)
                                                                                                      gcGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCt                                            <  2:1840905/150‑1 (MQ=255)
                                                                                                          aaaaGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCa                                        <  1:243585/150‑1 (MQ=255)
                                                                                                           aaaGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAg                                       <  1:670103/150‑1 (MQ=255)
                                                                                                           aaaGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAg                                       <  2:819796/150‑1 (MQ=255)
                                                                                                            aaGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAgg                                      <  2:1905650/150‑1 (MQ=255)
                                                                                                                    aCGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTa                                                                                           >  1:86809/1‑89 (MQ=255)
                                                                                                                    aCGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTa                                                                                           <  2:86809/89‑1 (MQ=255)
                                                                                                                      gCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCACGCTAGATGCGGTCTGGCAGGTCGTCAGCgg                            <  1:989526/150‑1 (MQ=255)
                                                                                                                       cTCATGACACCACCAATTGTGCAGGCCTGCCTGTAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGc                           <  1:1798972/150‑1 (MQ=255)
                                                                                                                               accaccAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCga                   <  1:274303/150‑1 (MQ=255)
                                                                                                                                ccaccaATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGGCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCgag                  >  2:1487172/1‑150 (MQ=255)
                                                                                                                                 caccaATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCg                                                >  2:500771/1‑119 (MQ=255)
                                                                                                                                 caccaATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCg                                                <  1:500771/119‑1 (MQ=255)
                                                                                                                                  ccctacggtgCAGTCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGaa                <  2:1079983/143‑1 (MQ=255)
                                                                                                                                  accaATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGaa                <  2:589498/150‑1 (MQ=255)
                                                                                                                                       ttGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGAACTAcc           <  1:1183787/150‑1 (MQ=255)
                                                                                                                                        tctgCAGGCAGGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTgggg                                                                                <  1:1848347/78‑1 (MQ=255)
                                                                                                                                        tctgCAGGCAGGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTgggg                                                                                >  2:1848347/3‑80 (MQ=255)
                                                                                                                                        tctgCAGGCAGGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGgtc                                    <  1:1740159/122‑1 (MQ=255)
                                                                                                                                        tctgCAGGCAGGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGgtc                                    >  2:1740159/3‑124 (MQ=255)
                                                                                                                                           gCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGAACTACCTGAc       <  1:396571/150‑1 (MQ=255)
                                                                                                                                           gCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGCCGTGTCGTCAGCGGCAGTCCCGAGAACTACCTGAc       >  1:1142061/1‑150 (MQ=255)
                                                                                                                                              ggCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGAACTACCTGACggg    <  1:1048403/150‑1 (MQ=255)
                                                                                                                                               gcctgcctGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGAACTACCTGACGGGc   >  2:621782/1‑150 (MQ=255)
                                                                                                                                                cctgcctgCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCGTTTCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGAACTACCTGACGGGcc  >  1:19735/1‑150 (MQ=255)
                                                                                                                                                cctgcctgCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGAACTACCTGACGGGcc  <  1:591236/150‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
GCGCCGTTTATGCGCCCAGCCCTGGCCGACAGCATCAGCGAGGTGACCAATACCTTCGTCACCGAGTACGAGAAGGCAATCGACCGCGCCATCCGGCGAGCAGCGAAAAAGGCAGCACGCTCATGACACCACCAATTGTGCAGGCCTGCCTGCAGAGCCCTGCCGTGACAGCGCTGCTTGGCGTCGGCACCGGCATGCGTCTCTACTCGTTTGGGGAGGCAGAGCAGGGCGTGGCCAAGCCATATGCGGTCTGGCAGGTCGTCAGCGGCAGTCCCGAGAACTACCTGACGGGCC  >  NC_002947/1763579‑1763872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑