BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,039,746	A→C	8.6%	P33P (CCT→CCG) ‡	PP_1812 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,039,746	0	A	C	8.6%	255.0 / 13.2	100	P33P (CCT→CCG) ‡	PP_1812	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (45/46); new base C (4/5); total (49/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01

Only 100 of 102 total aligned reads displayed.

CGTGCCAGTTTGTCGGGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTT  >  NC_002947/2039598‑2039895

cGTGCCAGTTTGTCGGGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAg                                                                                                                                                       <  2:1922598/150‑1 (MQ=255)

 gTGCCAGTTTGTCGGGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAgg                                                                                                                                                      <  2:1597281/150‑1 (MQ=255)

 gTGCCAGTTTGTCGGGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAgg                                                                                                                                                      <  2:1594930/150‑1 (MQ=255)

    ccAGTTTGTCGGGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGGTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGcc                                                                                                                                                   >  2:1206560/1‑150 (MQ=255)

       gTTTGTCGTGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTtg                                                                                                                                                >  2:327230/1‑150 (MQ=255)

       gTTTGTCGGGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGCGTTTCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTtg                                                                                                                                                >  1:206303/1‑150 (MQ=255)

        tttGTCGGGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTtg‑t                                                                                                                                              <  2:1595229/150‑1 (MQ=255)

          tctgggggggAGGCTTACCCGCTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCCTGGCCTTG‑TGc                                                                                                                                            <  2:1652283/146‑1 (MQ=255)

           gTCGGGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCCTGGCCTTG‑TGcc                                                                                                                                           <  1:253809/150‑2 (MQ=255)

            tCGGGGGGGGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGCCAGTGGTGTGCAGTGGGTATCGGACTACCGGGGATTTGGCTACAGGCACAAGGCCCTGGCCTTG‑TGcct                                                                                                                                          <  2:130531/150‑3 (MQ=255)

             cGGGGGGGGCCTTACGGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGACGGGCAGTGGTGGGCCGCGGGTATCTTACAAATTGGGATTTGGCTACACGCACAAGGCCAGGGCCTTG‑TGCGtt                                                                                                                                         <  1:1570364/150‑1 (MQ=255)

               gggggAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAgg                                                                                                                                                      >  2:764470/1‑136 (MQ=255)

               gggggAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAgg                                                                                                                                                      <  1:764470/136‑1 (MQ=255)

                 ggggggTTTACCGATGGGGGGTGGGTGTTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAgg                                                                                                                                     <  2:1360950/150‑1 (MQ=255)

                  ggAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAggg                                                                                                                                    >  2:110799/1‑150 (MQ=255)

                      gCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAgggccgg                                                                                                                                >  2:1831631/1‑150 (MQ=255)

                        ttACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAgggccgggc                                                                                                                              >  2:534340/1‑150 (MQ=255)

                        ttACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAgggccgggc                                                                                                                              >  2:673665/1‑150 (MQ=255)

                        ttACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACACGCACAAGGCCCTGGCCTTG‑TGcctgt                                                                                                                                        <  1:1149301/140‑5 (MQ=255)

                                tGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCCTGGCCtt                                                                                                                                                 >  1:1832568/1‑124 (MQ=255)

                                tGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCCTGGCCtt                                                                                                                                                 <  2:1832568/124‑1 (MQ=255)

                                ggggggAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCggg                                                                                                                      <  2:1837343/149‑1 (MQ=255)

                                  ggggAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTGGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGc                                                                                                                    <  1:1259720/150‑1 (MQ=255)

                                         gCGGTTTACGGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAACCGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACg                                                                                                             <  2:1902760/150‑1 (MQ=255)

                                           ggTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCGGGGCCGGGCCGAGCGGGGCGGAAACGGc                                                                                                           <  2:1436024/150‑1 (MQ=255)

                                             tttACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCa                                                                                                         >  2:1713376/1‑150 (MQ=255)

                                                 ccGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACggg                                                                                                     >  1:321740/1‑149 (MQ=255)

                                                    ggcgggcCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCCGGGCCGGGCCGAGCGGGGCGGAAACGGCCCCGGTTtg                                                                                                  >  2:380976/1‑150 (MQ=255)

                                                    ggcgggcCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTtg                                                                                                  >  1:704359/1‑150 (MQ=255)

                                                      cgggcCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTtgtg                                                                                                <  1:1713376/150‑1 (MQ=255)

                                                         gcCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAg                                                                                                                                      >  2:123010/1‑109 (MQ=255)

                                                         gcCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAg                                                                                                                                      <  1:123010/109‑1 (MQ=255)

                                                         gcCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTgtgggt                                                                                             >  1:1451030/1‑150 (MQ=255)

                                                         gcCTGGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGGAGAGGCGGGCAATGGGCATAGGACAAAAAGGAATTTGGCTCTAGGTACAAGGCCAGGGCCTGG‑GGCGGTCAGGGCCGGGCCGCGCGGGGCGGAAAAGGCCACGGTTTgtgggg                                                                                             >  2:1655833/1‑149 (MQ=255)

                                                           cTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGGGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTgtgggtgg                                                                                           <  2:1429711/150‑1 (MQ=255)

                                                            ttGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGtgggtggg                                                                                          >  2:608830/1‑150 (MQ=255)

                                                             tGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGTGGAAACGGCCACGGTTTGTgggtgggt                                                                                         <  1:673665/150‑1 (MQ=255)

                                                             tGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTgggtgggt                                                                                         <  1:1502720/150‑1 (MQ=255)

                                                                  ggcgggcgTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGt                                                                                    <  1:1655833/150‑1 (MQ=255)

                                                                  ggcgggcgTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGt                                                                                    <  1:110799/150‑1 (MQ=255)

                                                                     gggcgTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGa                                                                                 <  2:704359/150‑1 (MQ=255)

                                                                         gTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAGACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGt                                                                             >  2:846736/1‑150 (MQ=255)

                                                                           tGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGttt                                                                           <  1:534340/150‑1 (MQ=255)

                                                                           ggTAGGAGGATGGCCGGGCAGTGGTGGGCAGTGCATGTTGGACACCCGGGGAGTTGGCGACCGGCAGAAGGCCATGGCCTTG‑TGCGTTCAGGGCCGGGCAGAGCGGGGCGGAAACGTCCACGGTTTGTGGGTGGGTGAAGTTGAGCGttt                                                                           <  2:414083/149‑1 (MQ=255)

                                                                             tAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTg                                                                         <  1:1042885/150‑1 (MQ=255)

                                                                               ggAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCt                                                                       <  1:1831631/150‑1 (MQ=255)

                                                                               ggAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTGTGTGGGTGGGGGAAGTTGAGCGTCTTGcc                                                                       >  2:1781034/1‑149 (MQ=255)

                                                                                 ggaAGGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAGCGGGGATTTGGCTACAGGCACAAGGGGAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGa                                                                     <  2:60102/149‑1 (MQ=255)

                                                                                  gaATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGAc                                                                    <  2:321740/150‑1 (MQ=255)

                                                                                  gaATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGAc                                                                    <  1:608830/150‑1 (MQ=255)

                                                                                    aTGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTCGATGTAGT‑AGTGCCGGTGCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCg                                                                  >  1:1671031/1‑150 (MQ=255)

                                                                                     tGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGa                                                                 <  2:131126/150‑1 (MQ=255)

                                                                                        ccGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTgtgggtgg                                                                                           <  2:1252433/121‑1 (MQ=255)

                                                                                        ccGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTgtgggtgg                                                                                           >  1:1252433/1‑121 (MQ=255)

                                                                                        ccGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTc                                                              >  1:1528424/1‑150 (MQ=255)

                                                                                           ggCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGt                                                           >  2:1680562/1‑150 (MQ=255)

                                                                                             cAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTgtggg                                                                                              <  1:725112/113‑1 (MQ=255)

                                                                                             cAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTgtggg                                                                                              >  2:725112/1‑113 (MQ=255)

                                                                                             cAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTaa                                                         <  1:1903702/150‑1 (MQ=255)

                                                                                                tggtggGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCa                                                      >  2:662557/1‑150 (MQ=255)

                                                                                                  gtggGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTCGTGGGTGGGGGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCAtt                                                    >  2:364629/1‑150 (MQ=255)

                                                                                                      gCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGcc                                                <  1:1206560/150‑1 (MQ=255)

                                                                                                        aGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAGCCATTCGCCgg                                              >  1:1027941/1‑150 (MQ=255)

                                                                                                                tCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTg                                      <  1:1680562/150‑1 (MQ=255)

                                                                                                                 cGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTgg                                     <  1:1508098/150‑1 (MQ=255)

                                                                                                                 cGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTgg                                     >  2:894043/1‑150 (MQ=255)

                                                                                                                  ggACAAACGGGGATTTGGCTAAAGGCCCAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTGTGCTGACCGATTCGGTAACCATTGGCCGGGGTAGTTggg                                    >  2:1455276/1‑150 (MQ=255)

                                                                                                                   gACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGt                                   >  2:1739518/1‑150 (MQ=255)

                                                                                                                      aaaCGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTAtt                                >  1:113236/1‑150 (MQ=255)

                                                                                                                      aaaCGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTAtt                                >  1:1127420/1‑150 (MQ=255)

                                                                                                                        aCGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATtgt                              >  1:569806/1‑150 (MQ=255)

                                                                                                                        aCGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATtgt                              <  1:1282709/150‑1 (MQ=255)

                                                                                                                          ggggATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCg                                                             <  2:1186084/117‑1 (MQ=255)

                                                                                                                          ggggATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCg                                                             >  1:1186084/1‑117 (MQ=255)

                                                                                                                           gggATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCg                           >  2:1092680/1‑150 (MQ=255)

                                                                                                                              aTTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGcc                        >  1:1704914/1‑150 (MQ=255)

                                                                                                                                ttGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAg                      <  1:662557/150‑1 (MQ=255)

                                                                                                                                ttGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAg                      <  1:894043/150‑1 (MQ=255)

                                                                                                                                 tGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTGTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAgg                     <  2:1451030/150‑1 (MQ=255)

                                                                                                                                   gCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAg                      >  1:104277/1‑147 (MQ=255)

                                                                                                                                   gCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAg                      <  2:104277/147‑1 (MQ=255)

                                                                                                                                    ctgaacgCACAAGGCCCTGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCAAGGTTTGTGTGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGACGGGGTAGGTGGGTATTGTGCGGCCAGGTTa                  >  2:833432/7‑150 (MQ=255)

                                                                                                                                     tACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCATGTTAc                 >  2:302249/1‑150 (MQ=255)

                                                                                                                                     tACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTAc                 >  1:1068708/1‑150 (MQ=255)

                                                                                                                                         ggCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGc             <  1:846736/150‑1 (MQ=255)

                                                                                                                                         cgCACAAGGCCCTGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAAGCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGc             >  1:404830/2‑150 (MQ=255)

                                                                                                                                          gCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCg                                                             <  2:1264226/101‑1 (MQ=255)

                                                                                                                                          gCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCg                                                             >  1:1264226/1‑101 (MQ=255)

                                                                                                                                           cacaAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAAACATTCGCCGGGGTAGTTGGGTa                                  <  2:1092917/127‑1 (MQ=255)

                                                                                                                                           cacaAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAAACATTCGCCGGGGTAGTTGGGTa                                  >  1:1092917/1‑127 (MQ=255)

                                                                                                                                            acaAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTgg                                     >  1:1345211/1‑123 (MQ=255)

                                                                                                                                            acaAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTgg                                     <  2:1345211/123‑1 (MQ=255)

                                                                                                                                            acaAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAg          >  2:531714/1‑150 (MQ=255)

                                                                                                                                            acaAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAg          >  1:144281/1‑150 (MQ=255)

                                                                                                                                            acaAGGCCAGGGCCGTG‑TACGGTCAGGGCCGTGCCGAGCGGGGCGGACACGGCCGCGGCCTGAGGGTGAATGAAGATGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGCAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAg          >  2:711970/1‑150 (MQ=255)

                                                                                                                                                ggCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGggtt      <  2:1068708/150‑1 (MQ=255)

                                                                                                                                                 gCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGATAGggttg     <  2:1528424/150‑1 (MQ=255)

                                                                                                                                                   cAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGggttggt   >  2:1317490/1‑150 (MQ=255)

                                                                                                                                                    aGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGggttggtt  >  2:1846066/1‑150 (MQ=255)

                                                                                                                                                    aGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGggttggtt  >  2:202952/1‑150 (MQ=255)

CGTGCCAGTTTGTCGGGGGGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTG‑TGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTT  >  NC_002947/2039598‑2039895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`