BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,749,325	C→T	6.2%	H98Y (CAC→TAC) ‡	PP_2405 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,749,325	0	C	T	6.2%	281.2 / 6.3	97	H98Y (CAC→TAC) ‡	PP_2405	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (36/55); new base T (3/3); total (39/58)
Fisher's exact test for biased strand distribution p-value = 6.82e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01

Only 100 of 103 total aligned reads displayed.

GCCGCCCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACTTTGTC  >  NC_002947/2749177‑2749474

gccgccCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGca                                                                                                                                                      >  1:108496/1‑150 (MQ=255)

gccgccCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGca                                                                                                                                                      >  1:733101/1‑150 (MQ=255)

gccgccCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGca                                                                                                                                                      >  1:1050230/1‑150 (MQ=255)

gccgccCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGca                                                                                                                                                      >  2:124986/1‑150 (MQ=255)

gccgccCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGca                                                                                                                                                      >  1:692507/1‑150 (MQ=255)

   gccCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCacac                                                                                                                                                   <  2:828124/150‑1 (MQ=255)

     cccTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACAccc                                                                                                                                                 <  2:1570328/150‑1 (MQ=255)

     cccTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACAccc                                                                                                                                                 <  2:411635/150‑1 (MQ=255)

       cTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCt                                                                                                                                               <  2:1390267/150‑1 (MQ=255)

        tGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGAATGCCTCCCCTGACGTTGCAGCCTGTCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTTGTAGGGGTGTGCACCCCta                                                                                                                                              <  1:610931/150‑2 (MQ=255)

         ggATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGTGCACCCCtac                                                                                                                                             <  2:1323556/150‑3 (MQ=255)

          gATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAg                                                                                                                                            <  2:832692/150‑1 (MQ=255)

            tGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGtt                                                                                                                                          >  1:1508627/1‑150 (MQ=255)

             gCCCCGGGGCTCTAGTGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGTATGTGAACGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTc                                                                                                                                         <  2:1054108/150‑1 (MQ=255)

             gCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCCGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTc                                                                                                                                         <  1:1385176/150‑1 (MQ=255)

               cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGa                                                                                                                                       <  2:188883/150‑1 (MQ=255)

               cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGa                                                                                                                                       <  2:1406700/150‑1 (MQ=255)

               cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGa                                                                                                                                       <  1:200918/150‑1 (MQ=255)

               cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATGGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGa                                                                                                                                       >  1:930766/1‑150 (MQ=255)

                   gggCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTAc                                                                                                                                   <  2:733101/150‑1 (MQ=255)

                     gCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGa                                                                                                                                 <  1:67171/150‑1 (MQ=255)

                      cTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAg                                                                                                                                <  2:366982/150‑1 (MQ=255)

                       tCAATGGCAAGGCGTTTCTGGTGGACTTCTGGACCAGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGATGCACACCCCTGAGTTCGACTACGAGc                                                                                                                               >  2:1013808/1‑150 (MQ=255)

                       tCAAGGGCAAGGTGGTGCTGGTGGCCTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGc                                                                                                                               >  1:912946/1‑150 (MQ=255)

                         aaGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCat                                                                                                                             <  1:1159270/150‑1 (MQ=255)

                              cAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGAtgt                                                                                                                        <  1:954172/150‑1 (MQ=255)

                                aGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTgg                                                                                                                      <  2:544347/150‑1 (MQ=255)

                                    ggtgCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGAc                                                                                                                  >  2:1230403/1‑150 (MQ=255)

                                     gtgCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACt                                                                                                                 >  2:1433383/1‑150 (MQ=255)

                                        cTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTg                                                                                                              >  1:1586445/1‑150 (MQ=255)

                                          ggtggACTTCTGCACCTGGCACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTCGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCg                                                                                                            <  2:507177/150‑1 (MQ=255)

                                           gtggACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCgg                                                                                                           <  2:235245/150‑1 (MQ=255)

                                           gtggACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCgg                                                                                                           <  1:1411136/150‑1 (MQ=255)

                                             ggACTTCTCGACCTGGGACTGGATCAACTGCCGGCGCAGCCTGCCGCATTGGGCTGAGTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGGGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGa                                                                                                         <  2:912946/150‑1 (MQ=255)

                                              gACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGAc                                                                                                        <  2:1586445/150‑1 (MQ=255)

                                                  tCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAgg                                                                                                    <  1:1925397/150‑1 (MQ=255)

                                                  tCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAgg                                                                                                    <  1:535034/150‑1 (MQ=255)

                                                  tCTGGACCTGGGACTGCATCAACTGCAGACGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAgg                                                                                                    <  1:862912/150‑1 (MQ=255)

                                                     ggACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACGCCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAg                                                                                                 <  2:692507/150‑1 (MQ=255)

                                                      gagcTGGGTCTGCATCAAGTGTCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGc                                                                                                <  2:108496/147‑1 (MQ=255)

                                                      gaaatGGGAGTGCAACAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGCAGGGGTGCACACTCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGc                                                                                                <  2:1050230/146‑1 (MQ=255)

                                                        ccTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGccc                                                                                              >  1:1538592/1‑150 (MQ=255)

                                                         cTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTa                                                                                                  >  1:1600630/1‑145 (MQ=255)

                                                         cTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTa                                                                                                  <  2:1600630/145‑1 (MQ=255)

                                                         cTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCg                                                                                             >  1:839258/1‑150 (MQ=255)

                                                         cTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCg                                                                                             >  1:1527545/1‑150 (MQ=255)

                                                          tGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCgg                                                                                            >  1:1128616/1‑150 (MQ=255)

                                                           gggACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCgg                                                                                                           <  1:1680208/134‑1 (MQ=255)

                                                           gggACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCgg                                                                                                           >  2:1680208/1‑134 (MQ=255)

                                                            ggACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGtt                                                                                          >  2:1695529/1‑150 (MQ=255)

                                                              aCTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGTGTGCACACCCCTGAGTTCGAATACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgg                                                                                        <  2:741647/150‑1 (MQ=255)

                                                              aCTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgg                                                                                        <  2:1363600/150‑1 (MQ=255)

                                                              aCTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgg                                                                                        <  1:1891373/150‑1 (MQ=255)

                                                               cTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTggg                                                                                       >  2:334512/1‑150 (MQ=255)

                                                                     cAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcgg                                                                                 <  2:1125778/150‑1 (MQ=255)

                                                                      aaCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATTCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcggg                                                                                >  1:929322/1‑150 (MQ=255)

                                                                      aaCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGGTgggtatcggg                                                                                >  1:855928/1‑150 (MQ=255)

                                                                           ccGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATcc                                                                           >  1:1522306/1‑150 (MQ=255)

                                                                            cGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACCCCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCg                                                                          <  2:850650/150‑1 (MQ=255)

                                                                             ggCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCgg                                                                         >  1:1404391/1‑150 (MQ=255)

                                                                               cgcAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTg                                                                       <  1:833162/150‑1 (MQ=255)

                                                                                 cAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGCTCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcggggat                                                                             >  2:109985/1‑142 (MQ=255)

                                                                                 cAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcgggtat                                                                             <  1:109985/142‑1 (MQ=255)

                                                                                      tGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGTACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAg                                                                >  2:270025/1‑150 (MQ=255)

                                                                                             tgtgAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGa                                                         >  2:1251245/1‑150 (MQ=255)

                                                                                             tgtgAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGa                                                         <  1:334512/150‑1 (MQ=255)

                                                                                                  aTGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTaaa                                                    >  1:266403/1‑148 (MQ=255)

                                                                                                  aTGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACa                                                    >  1:1314646/1‑150 (MQ=255)

                                                                                                    gATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAg                                                  <  2:1522306/150‑1 (MQ=255)

                                                                                                    gATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAg                                                  <  1:272476/150‑1 (MQ=255)

                                                                                                        gggCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGgtgt                                              <  1:1776157/150‑1 (MQ=255)

                                                                                                             cggcgcTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAAt                                         <  1:1258075/150‑1 (MQ=255)

                                                                                                              ggcgcTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATg                                        >  1:1270353/1‑150 (MQ=255)

                                                                                                               gagcTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGc                                       >  2:223099/3‑150 (MQ=255)

                                                                                                                  cTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGa                                                         >  2:1529030/1‑129 (MQ=255)

                                                                                                                  cTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGa                                                         <  1:1529030/129‑1 (MQ=255)

                                                                                                                  cTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTg                                    <  1:312904/150‑1 (MQ=255)

                                                                                                                  cTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTg                                    <  2:855928/150‑1 (MQ=255)

                                                                                                                   tATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTgg                                   <  2:1538592/150‑1 (MQ=255)

                                                                                                                    aTGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTggg                                  <  2:1527545/150‑1 (MQ=255)

                                                                                                                    aTGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTggg                                  <  1:471812/150‑1 (MQ=255)

                                                                                                                     tGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTgggg                                 <  1:223099/150‑1 (MQ=255)

                                                                                                                         gATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAAc                             >  2:1822231/1‑150 (MQ=255)

                                                                                                                         gATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAAc                             <  2:1128616/150‑1 (MQ=255)

                                                                                                                                  cTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTgg                    <  2:1314646/150‑1 (MQ=255)

                                                                                                                                    ggtggtggtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGcc                  >  1:498613/1‑150 (MQ=255)

                                                                                                                                      tggtggtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCgg                >  1:923195/1‑150 (MQ=255)

                                                                                                                                      tggtggtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCgg                >  2:1239379/1‑150 (MQ=255)

                                                                                                                                          ggtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCa            >  2:832377/1‑150 (MQ=255)

                                                                                                                                          ctcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCa            >  1:1703975/4‑150 (MQ=255)

                                                                                                                                           tcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGt                                                                                           >  2:313997/3‑70 (MQ=255)

                                                                                                                                           tcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGt                                                                                           <  1:313997/68‑1 (MQ=255)

                                                                                                                                           tcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTCGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCAt           >  2:529844/3‑150 (MQ=255)

                                                                                                                                           gtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCAt           <  2:930766/150‑1 (MQ=255)

                                                                                                                                           gtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCAt           >  1:1498115/1‑150 (MQ=255)

                                                                                                                                               gggTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACt       >  1:1103400/1‑150 (MQ=255)

                                                                                                                                               gggTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACt       <  2:1270353/150‑1 (MQ=255)

                                                                                                                                                ggTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGTCCGGTTgggtatcgg                                                                                 >  2:1605214/1‑75 (MQ=255)

                                                                                                                                                ggTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcgg                                                                                 <  1:1605214/75‑1 (MQ=255)

                                                                                                                                                    cacaCCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGCTCTGGCCGGTGCATTACTTTGTc  <  2:929322/150‑1 (MQ=255)

GCCGCCCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACTTTGTC  >  NC_002947/2749177‑2749474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`