Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 27,581 | C→T | 11.3% | intergenic (‑428/+18) | PP_0022 ← / ← PP_0023 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 27,581 | 0 | C | T | 11.3% | 112.7 / 5.3 | 44 | intergenic (‑428/+18) | PP_0022/PP_0023 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (18/21); new base T (2/3); total (20/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01 |
ATCAGTCTCGTCGTCCGCACTGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTGGGCCTGGCTTGATGCTCATGCA > NC_002947/27433‑27730 | atCAGTCTCGTCGTCCGCACTGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCNccc < 2:1193634/150‑1 (MQ=255) gCACTGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCACCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTc < 1:1548888/150‑1 (MQ=255) cACTGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCt < 2:766694/150‑1 (MQ=255) tGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCTCGGGAGCTGCtttttttttgg < 1:818189/150‑6 (MQ=255) aaGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTc > 2:1672412/1‑150 (MQ=255) gATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTccccc < 1:970817/150‑1 (MQ=255) ccGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCttttt > 2:907093/1‑150 (MQ=255) gATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCACTTTTtgt < 1:1817539/150‑1 (MQ=255) gTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTggg < 1:1739437/150‑1 (MQ=255) aGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGt < 1:854319/150‑1 (MQ=255) ttCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTc > 2:1226903/1‑150 (MQ=255) ttCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTc < 1:1901230/150‑1 (MQ=255) gAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCCAAAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTTTTCTTGTTGGGTTTCAgg > 2:1099124/1‑150 (MQ=255) aTCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGAt > 2:505832/1‑150 (MQ=255) cTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAg < 1:1681283/150‑1 (MQ=255) tCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAgg > 2:668172/1‑150 (MQ=255) tCACGACCCGGGCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAACAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAgg > 1:731707/1‑150 (MQ=255) cACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAggg < 1:1226903/150‑1 (MQ=255) cACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAggg < 1:1081104/150‑1 (MQ=255) acgacgCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAgct > 2:575252/1‑79 (MQ=255) acgacgCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAgct < 1:575252/79‑1 (MQ=255) cgcgGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGAc < 1:505832/150‑1 (MQ=255) cGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGc > 2:1739015/1‑150 (MQ=255) gATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGcc < 1:1117682/150‑1 (MQ=255) aTTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAg > 1:1573913/1‑108 (MQ=255) aTTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAg < 2:1573913/108‑1 (MQ=255) aTCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTg > 1:1649850/1‑150 (MQ=255) aTCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACCCCCCCTTTATGAACTCGTGGAGTGAATTCACCGAAAGAGCGTGCTGGGTTTCAGGGGTGACTCGCTGCCTTTTg > 1:1376089/1‑150 (MQ=255) gagaCGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGa < 1:1739015/150‑1 (MQ=255) tGAGGGTTTGCACACAGCCCC‑‑AAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTc > 1:1779765/1‑150 (MQ=255) gggTTTCCACACAGCCCC‑AAAGAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTGCTTCTGCTTTTCAGGTGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTctt < 2:287520/150‑3 (MQ=255) ggTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCAtt < 1:78347/150‑1 (MQ=255) gTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTg < 1:668172/150‑1 (MQ=255) ttGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGt < 1:146559/150‑1 (MQ=255) cc‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTGGGcc > 1:179831/1‑150 (MQ=255) aaaaaaGCAGCTCTCGGGAGCTGCTTTTTTTTTACTCCCCCTTTTTGTGCTTGTggg < 2:1177982/57‑1 (MQ=17) aaaaaaGCAGCTCTCGGGAGCTGCTTTTTTTTTACTCCCCCTTTTTGTGCTTGTggg > 1:1177982/1‑57 (MQ=18) aaaaaaGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTGGGCCTGGCt < 2:1376089/150‑1 (MQ=255) aaaGCAGCTCTCGGGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTg < 2:28906/138‑1 (MQ=255) aaaGCAGCTCTCGGGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTg > 1:28906/1‑138 (MQ=255) aaaGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGt > 1:91222/1‑130 (MQ=255) aaaGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGt < 2:91222/130‑1 (MQ=255) aaaGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTGGGCCTGGCTTGa > 2:96111/1‑150 (MQ=255) tCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGTGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGGGTGCCATCTTCATTGGTGCGCTTTGGGCCTGGCTTGATGCTCATg > 1:7179/1‑150 (MQ=255) tCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGTGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTGGGCCTGGCTTGATGCTCATg > 1:7206/1‑150 (MQ=255) ccGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTGGGCCTGGCTTGATGCTCATGCa > 2:355280/1‑150 (MQ=255) ccGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTGGGCCTGGCTTGATGCTCATGCa > 2:355690/1‑150 (MQ=255) | ATCAGTCTCGTCGTCCGCACTGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACGCGGTCCGATTGATCAGCGAGACGGTCGTGAGGGTTTGCACACAGCCCC‑AAAAAAAAAGCAGCTCCCGAGAGCTGCTTTTTTCTTACTCCCCCTTTTTGTGCTTGTGGGGTTTCAGGTCCGGATGGTCCTTCTGCTTTTCAGGGGTGACTCGCTGCCTTTTGTCCGGAGTGCCATCTTCATTGGTGCGCTTTGGGCCTGGCTTGATGCTCATGCA > NC_002947/27433‑27730 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |