| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,628,125 | C→G | 8.4% | intergenic (+11/‑129) | PP_3198 → / → PP_3199 | 2Fe‑2S ferredoxin/monooxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,628,125 | 0 | C | G | 8.4% | 298.5 / 16.2 | 95 | intergenic (+11/‑129) | PP_3198/PP_3199 | 2Fe‑2S ferredoxin/monooxygenase |
| Reads supporting (aligned to +/- strand): ref base C (38/49); new base G (4/4); total (42/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.57e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
CTACGCCCACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGTGAACAACG > NC_002947/3627976‑3628272 | cTACGCCCACGGCGCGCGCTTCACGTCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGCGGCAACCGCACGCCGCGGCGCTGGGGGCGGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATcgcgcc > 1:698351/1‑150 (MQ=255)cTACGCCCACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATcgcgcc < 2:401232/150‑1 (MQ=255) tACGCCCACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATcgcgccg < 1:1353312/150‑1 (MQ=255) cGCCCACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATcgcgccgcg < 1:556407/150‑1 (MQ=255) gCCCACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATcgcgccgcgc < 1:993857/150‑1 (MQ=255) gCCCACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATcgcgccgcgc < 1:1379341/150‑1 (MQ=255) cGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCGGCGCGATAg < 1:1544307/150‑1 (MQ=255) cGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAg < 1:566644/150‑1 (MQ=255) cgcgcgcTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTc < 2:411837/150‑1 (MQ=255) gcgcgcTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAAGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCg > 2:575436/1‑150 (MQ=255) ttCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATccc > 2:259301/1‑150 (MQ=255) ttCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATccc > 2:1277022/1‑150 (MQ=255) aCGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCcgcg > 1:665375/1‑150 (MQ=255) gCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCcgcgac < 1:445235/150‑1 (MQ=255) gCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCcgcgac > 2:637941/1‑150 (MQ=255) ccGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCcgcgacgc < 2:37116/150‑1 (MQ=255) cGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCcgcgacgcg > 1:772352/1‑150 (MQ=255) gacgACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCcgcgacgcga < 2:1474371/147‑1 (MQ=255) aGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGAtt < 1:259301/150‑1 (MQ=255) ggCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑c < 2:1127058/150‑1 (MQ=255) aCTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATg > 2:1817203/1‑150 (MQ=255) ttGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CAt < 1:1486452/147‑1 (MQ=255) ttGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CAt > 2:1486452/1‑147 (MQ=255) tGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGAAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGAc < 2:458316/150‑1 (MQ=255) cGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCg < 1:55086/150‑1 (MQ=255) cGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCg < 1:54591/150‑1 (MQ=255) ttCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGC‑GACCTATCGCGCGGCGCGATa < 2:737289/113‑1 (MQ=255) ttCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGC‑GACCTATCGCGCGGCGCGATa > 1:737289/1‑113 (MQ=255) aCGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGa < 1:638128/109‑1 (MQ=255) aCGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGa > 2:638128/1‑109 (MQ=255) cGGCCCCTGCCGAGGCGAAGCCTTGGAGGGACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAg < 2:587702/150‑1 (MQ=255) tGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGaa < 1:289473/150‑1 (MQ=255) gCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATg < 1:822256/131‑1 (MQ=255) gCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATg > 2:822256/1‑131 (MQ=255) aGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtgt < 2:1778136/150‑1 (MQ=255) aGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtgt < 1:1536957/150‑1 (MQ=255) gCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtgt < 2:1157679/148‑1 (MQ=255) gCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtgt > 1:1157679/1‑148 (MQ=255) gCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCCGACCTATCGCGCGGCGCGATAg < 2:1577560/97‑1 (MQ=255) gCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCCGACCTATCGCGCGGCGCGATAg > 1:1577560/1‑97 (MQ=255) cGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtg < 2:394634/146‑1 (MQ=255) cGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtg > 1:394634/1‑146 (MQ=255) cGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGCTGGATTG‑CCGGCGCAGGCGGGAAGCTGTGCa < 1:1296162/150‑1 (MQ=255) gAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CAt > 2:245787/1‑122 (MQ=255) gAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CAt < 1:245787/122‑1 (MQ=255) aGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAg < 2:665375/150‑1 (MQ=255) aGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAg < 2:101029/150‑1 (MQ=255) gCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAgg < 2:292248/150‑1 (MQ=255) ttGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGcac > 1:1193242/1‑150 (MQ=255) gAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCCTATGCACAgc < 2:69630/150‑2 (MQ=255) cTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACgg > 2:1406797/1‑150 (MQ=255) tCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTg < 2:1519254/101‑1 (MQ=255) tCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTg > 1:1519254/1‑101 (MQ=255) tCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGgc > 2:1429525/1‑150 (MQ=255) tCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGgc > 1:6093/1‑150 (MQ=255) cGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGgcc < 1:1277022/150‑1 (MQ=255) tCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGgccgcc > 2:779616/1‑150 (MQ=255) aGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑Ca > 1:554517/1‑150 (MQ=255) ggcggcTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACgggg < 2:274937/150‑1 (MQ=255) gcggcTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGgc < 1:1709759/150‑1 (MQ=255) ggctggctGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGTCATG‑CGGGgcgg < 1:845162/150‑2 (MQ=255) gctggctgCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtgt > 1:854241/1‑109 (MQ=255) gctggctgCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtgt < 2:854241/109‑1 (MQ=255) ctggctgCTATTGCCGACTGGAG‑TTCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGcac < 1:575436/150‑1 (MQ=255) ctctgctATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCacaa < 1:681495/148‑1 (MQ=255) tgctATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCAcaacaa > 2:1103919/1‑150 (MQ=255) tgctATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCAcaacaa > 2:424313/1‑150 (MQ=255) tgctATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCAcaacaa > 1:1035732/1‑150 (MQ=255) tgctATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGAGGGAAGATGTGAATAGGAACAGTAAAAGGCCTCCCCT‑CATGACGGGGCGCacaacag > 2:681495/1‑149 (MQ=255) gCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGTACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACaaa < 2:772352/150‑1 (MQ=255) gCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGa > 2:217178/1‑90 (MQ=255) gCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGa < 1:217178/90‑1 (MQ=255) ccG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACaaaa > 2:167755/1‑150 (MQ=255) g‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACg > 2:1634307/1‑150 (MQ=255) cTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGt < 1:1817203/150‑1 (MQ=255) ttGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTg > 2:1719282/1‑150 (MQ=255) tgcgcagcTCGATCGCTGACCTATCGCGCCGCGCGATAGGGCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTga < 1:1350855/147‑1 (MQ=255) gcagcTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGAc > 1:517403/1‑150 (MQ=255) gcagcTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGAc < 2:554517/150‑1 (MQ=255) cTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGc > 1:470562/1‑150 (MQ=255) gATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCAt > 2:1868922/1‑150 (MQ=255) gATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCAt < 1:1634307/150‑1 (MQ=255) gCTTACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCAGAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAAt > 2:1204941/1‑150 (MQ=255) aCCTATCGCGCGGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGa < 2:1267144/121‑1 (MQ=255) aCCTATCGCGCGGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGa > 1:1267144/1‑121 (MQ=255) aCCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCCATCCT‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACtg < 2:168306/150‑1 (MQ=255) aCCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGAGTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACtg < 1:1429525/150‑1 (MQ=255) ccTATCGCGCGGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGTCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACtgt > 2:617571/1‑150 (MQ=255) ccTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACtgt < 2:1489449/150‑1 (MQ=255) cTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCgg > 2:1211488/1‑62 (MQ=255) cTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCgg < 1:1211488/62‑1 (MQ=255) cTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACtgtg > 1:1209961/1‑150 (MQ=255) aTCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtgt > 2:1165726/1‑68 (MQ=255) aTCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCtgt < 1:1165726/68‑1 (MQ=255) aTCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGaa < 1:1310271/118‑1 (MQ=255) aTCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGaa > 2:1310271/1‑118 (MQ=255) gcgccgcgcGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGGCATGCCATGAATACTGTGancaa < 2:1193242/150‑1 (MQ=255) gcgccgcgcGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACCGGGCTCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGTGaacaa > 1:1058266/1‑150 (MQ=255) cgccgcgcGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGTGaacaac > 1:916854/1‑150 (MQ=255) gccgcgcGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGTGAACAACg > 2:190095/1‑150 (MQ=255) | CTACGCCCACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCG‑CTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGT‑CATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGTGAACAACG > NC_002947/3627976‑3628272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |