| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,869,902 | T→G | 8.1% | E354A (GAG→GCG) ‡ | PP_3419 ← | sigma‑54 dependent transcriptional regulator/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,869,902 | 0 | T | G | 8.1% | 266.1 / 12.8 | 108 | E354A (GAG→GCG) ‡ | PP_3419 | sigma‑54 dependent transcriptional regulator/response regulator |
| Reads supporting (aligned to +/- strand): ref base T (47/51); new base G (5/4); total (53/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.44e-01 | |||||||||||
Only 100 of 110 total aligned reads displayed.
GCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGTCACGCC > NC_002947/3869759‑3870049 | gCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCg > 1:78593/1‑150 (MQ=255) gTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGaaaa > 2:715163/1‑150 (MQ=255) cAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAgc < 2:42651/150‑1 (MQ=255) aaCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTTCGGCCGAGGCCGaaagcc < 2:181349/150‑4 (MQ=255) aaCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCGAGGCCGaaagcct < 1:91925/150‑5 (MQ=255) ccAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCa > 2:1892456/1‑150 (MQ=255) cAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAg > 2:910369/1‑150 (MQ=255) tCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCACGGCCGAAAAGCGCAGGTTcc > 2:678402/1‑149 (MQ=255) aTGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGTAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGc < 2:1258669/150‑1 (MQ=255) aTGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGc > 2:1926221/1‑150 (MQ=255) aTGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGc > 2:1926095/1‑150 (MQ=255) cacaGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTg < 2:299920/150‑1 (MQ=255) acaGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGc > 1:123023/1‑150 (MQ=255) tCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgc < 1:967436/150‑1 (MQ=255) cAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgcg > 1:1225440/1‑150 (MQ=255) aaCTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAgc < 2:804533/127‑1 (MQ=255) aCTGATGCGCTTGCACCCCCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGCCATCGTCAGGTTCGGCTTGCCATAGCGcc < 1:1698360/150‑1 (MQ=255) aCTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGcc > 2:1370321/1‑150 (MQ=255) aCTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGA‑TTTCAACCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGcc < 1:239798/150‑1 (MQ=255) tGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCgg > 2:1662075/1‑150 (MQ=255) cTTGCACCACCTCGTTCGGCGCCAGCGACGCCGTCGGCTCCAACATGTTGACCAACTCTGACTGGTGAGCGATCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtggt < 1:1468949/150‑1 (MQ=255) cTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtggt > 2:830228/1‑150 (MQ=255) ttGCACCACCTCGTTCGGTGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAttgtg > 1:625727/1‑150 (MQ=255) ttGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtggtg < 1:301364/150‑1 (MQ=255) tGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtggtgg < 2:734086/150‑1 (MQ=255) gCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTggg > 2:1064254/1‑150 (MQ=255) ccaccTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgc < 1:1252652/132‑1 (MQ=255) ccaccTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgc > 2:1252652/1‑132 (MQ=255) caccTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAg > 1:1081336/1‑150 (MQ=255) caccTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAg > 1:1081346/1‑150 (MQ=255) ccTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGa < 1:1511879/150‑1 (MQ=255) tttCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATg < 1:278201/149‑1 (MQ=255) gTTCGGCCCCACGACCCCCGTCTGCTCCAGCATGTTGCGCAATTCATGCACATTGCCAGGCCAGCTATAACCGAGCAGGAGGC‑TTTGGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATg < 2:1054244/150‑1 (MQ=255) ttCGGCGCCAGCAACCCCGTCTCCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGc < 2:1883782/150‑1 (MQ=255) gcgcCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCcgcg > 2:1841086/1‑150 (MQ=255) gcCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCGAGGCCGaaag < 1:56526/95‑2 (MQ=255) gcCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCGAGGCCGaaag > 2:56526/1‑94 (MQ=255) ccAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCa < 1:1662075/150‑1 (MQ=255) ccAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGAACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCa > 1:374314/1‑150 (MQ=255) cAGCAACTCCGTCTGGTGGAGCATGTGGCGCAATTCGCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTCGCCATAGCGCCGGCTATGGTGGGCAAGGACATGCCGCGCCAg > 2:25664/1‑150 (MQ=255) aGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGt > 2:5420/1‑150 (MQ=255) aaCACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCcgc < 1:645149/141‑1 (MQ=255) aaCACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCcgc > 2:645149/1‑141 (MQ=255) accccGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGCCAAGGAAATGCCGCGCCAGTAGCa < 1:1697326/147‑1 (MQ=255) ccGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGa < 2:1695443/150‑1 (MQ=255) cccgCATGTTGCGCAATTCACGCCCATTGCCAGGCCACATATACCCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGcc < 1:678402/147‑1 (MQ=255) cAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGccc > 2:1918065/1‑150 (MQ=255) cAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGccc > 1:1085926/1‑150 (MQ=255) gCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCa > 1:175224/1‑135 (MQ=255) gCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCa < 2:175224/135‑1 (MQ=255) ttGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCCAGCGAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGaa > 1:495725/1‑150 (MQ=255) ttGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGaa > 2:924255/1‑150 (MQ=255) ttGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGaa < 1:1918065/150‑1 (MQ=255) ttGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGaa < 1:373595/150‑1 (MQ=255) ttGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGaa < 2:1081336/150‑1 (MQ=255) ttGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGaa < 2:1081346/150‑1 (MQ=255) cAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATTGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAg < 2:625727/150‑1 (MQ=255) ttCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGgcg > 2:1241406/1‑150 (MQ=255) cACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCGGCCCACGCGAATACAGGcgcg < 1:1841086/150‑1 (MQ=255) aCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgcgc < 2:915554/82‑1 (MQ=255) aCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgcgc > 1:915554/1‑82 (MQ=255) acaTTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCAcc > 1:522885/1‑150 (MQ=255) acaTTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCAcc > 2:36017/1‑150 (MQ=255) aTTGCCAGGCCAGCTATAACCGCGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCtt < 1:1064254/150‑1 (MQ=255) gccaggccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAg < 1:1730601/150‑1 (MQ=255) ccaggccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAgg < 2:1738091/150‑1 (MQ=255) aggccagCTATCACCGAGCAGCAGGC‑GTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCAGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGTCACCTTCAGGGc > 2:1059299/1‑150 (MQ=255) gccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGGTGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGa < 1:1926095/150‑1 (MQ=255) gccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGa < 1:1926221/150‑1 (MQ=255) ccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTc > 1:1622961/1‑111 (MQ=255) ccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTc < 2:1622961/111‑1 (MQ=255) ccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGAt > 1:409244/1‑150 (MQ=255) cagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATg < 2:823935/89‑1 (MQ=255) cagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATg < 2:827813/89‑1 (MQ=255) cagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATg > 1:823935/1‑89 (MQ=255) cagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATg > 1:827813/1‑89 (MQ=255) agCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATaa > 2:888984/1‑150 (MQ=255) ataACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCg > 2:675473/1‑150 (MQ=255) aCCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGGTCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAg > 1:680626/1‑150 (MQ=255) aCCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCCAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAg < 1:1892456/150‑1 (MQ=255) ccGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGgcg > 2:1911680/1‑122 (MQ=255) agcagcAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCgg < 1:154808/150‑1 (MQ=255) cagcagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaa < 1:830228/150‑1 (MQ=255) atctagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaa < 1:873671/146‑1 (MQ=255) gcagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaaga > 2:1436575/1‑150 (MQ=255) cagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAAGGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaagaa < 1:508086/150‑1 (MQ=255) ggC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACa > 2:294594/1‑150 (MQ=255) ggC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACa < 2:204650/150‑1 (MQ=255) ggC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCAACTTAAGGGGGATAATTCGATGGTGgaagtgat > 2:873671/1‑146 (MQ=255) gcttttCGGCCGAGGCCG‑AAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCCCGGATGCTTCATGGCGATAATGCGAAGGCGGAAGAACAg > 2:1589630/4‑150 (MQ=255) gC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtggtgg > 2:776246/1‑58 (MQ=255) gC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtggtgg < 1:776246/58‑1 (MQ=255) gC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAg < 2:123023/150‑1 (MQ=255) c‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAgg < 1:305324/150‑1 (MQ=255) c‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAgg < 1:94060/150‑1 (MQ=255) ttttCGGCCGAGGCCGAAAGGCGCAGGTTCGACTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAgg > 2:907022/2‑150 (MQ=255) ttttCGGCCGAGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAAc > 1:1896643/2‑147 (MQ=255) ttttCGGCCGAGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAgg > 1:1755877/2‑150 (MQ=255) tcggcctcggccGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGTCa > 2:1488581/1‑150 (MQ=255) cctccgccGACAAGCGCAGGTTCGGCGCGCCATACCGCCGGCTATGGTGGGCGAGGAAATCCCGCGCCAGTAGCGGGATGTCCTGCCCCCGCCAATACAGGCGCGGCGTCTTCAGCGCGATAATGCGAAGCCGGAAGAACAGGTCACGcc > 2:592985/1‑150 (MQ=255) | GCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGTCACGCC > NC_002947/3869759‑3870049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |