| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499443 = | 26 (0.460) | 21 (0.450) | 14/220 | 2.8 | 57.1% | intergenic (+13/‑153) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | 1499526 = | 10 (0.220) | intergenic (+96/‑70) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
TCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCT > NC_002947/1499300‑1499587 | cagtttcctgcgccgcgtcatggaagaagtcgggacgtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAg < 1:149586‑M1/7‑1 (MQ=255) tttcctgcgccgcgtcatggaagaagtcgggacgtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTgg > 1:870083‑M1/141‑144 (MQ=255) tttcctgcgccgcgtcatggaagaagtcgggacgtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTgg < 2:870083‑M1/4‑1 (MQ=255) tttcctgcgccgcgtcatggaagaagtcgggacgtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCgg > 1:163055‑M1/141‑150 (MQ=255) ctgcgccgcttcatggaagaagtcgggacgtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGt > 2:360804‑M1/137‑150 (MQ=255) ccTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGt < 2:931973/150‑1 (MQ=255) cTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCgg < 1:261952/145‑1 (MQ=255) cTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCgg > 2:261952/1‑145 (MQ=255) ttCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCcgcg > 1:886934/1‑150 (MQ=255) atggaagaagtcgggacgtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACa < 1:100186‑M1/26‑1 (MQ=255) atggaagaagtcgggacgtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACa < 1:955755‑M1/26‑1 (MQ=255) gtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAACACAGGCGCCGCGGTGCATg > 2:833043‑M1/108‑150 (MQ=255) ttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTgg < 2:112919‑M1/4‑1 (MQ=255) ttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTgg > 1:112919‑M1/106‑109 (MQ=255) cAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCa < 2:942032/150‑1 (MQ=255) tctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCgg > 2:769616‑M1/100‑109 (MQ=255) tctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCgg < 1:769616‑M1/10‑1 (MQ=255) cGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCttt > 2:962831/1‑150 (MQ=255) gcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCgg < 2:801201‑M1/10‑1 (MQ=255) gcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCgg > 1:801201‑M1/97‑106 (MQ=255) cGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGgcgc < 2:1049242/125‑1 (MQ=255) cGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGgcgc > 1:1049242/1‑125 (MQ=255) gCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACATCAGGACCGAGGCTGCCAACCGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGgt < 2:741786/150‑1 (MQ=255) tagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGgtg < 2:1343550‑M1/60‑1 (MQ=255) gCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCt > 1:240820/1‑139 (MQ=255) gCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCt < 2:240820/139‑1 (MQ=255) cgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTc < 1:1382918‑M1/63‑1 (MQ=255) ttctaagagagtcatcattcgttaaagaggcaacaaaaaacgggccgtcactgtagccataggcccgcttaatggcaattagtctGTGGGAGCGGCCGTGCCCGCGAA‑ACAGGCGCCGAGGTGCATGGCACCGGCTTTGCCGGTGTTcgc > 1:400235‑M1/86‑150 (MQ=255) tctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcg > 1:142943‑M1/85‑150 (MQ=255) tctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcg > 1:140303‑M1/85‑150 (MQ=255) tctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcg > 1:142527‑M1/85‑150 (MQ=255) ctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg > 2:955755‑M1/84‑150 (MQ=255) ctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg > 1:1343550‑M1/84‑150 (MQ=255) ctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg > 2:100186‑M1/84‑150 (MQ=255) taagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCggg > 2:1382918‑M1/83‑150 (MQ=255) aaCGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACa > 1:774972/1‑104 (MQ=255) aaCGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACa < 2:774972/104‑1 (MQ=255) aCGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGc < 2:50069/150‑1 (MQ=255) cGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGcc < 2:1219765/150‑1 (MQ=255) tcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcg < 1:80413‑M1/66‑1 (MQ=255) tcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcg > 2:80413‑M1/75‑140 (MQ=255) tgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGtt < 2:1307623‑M1/62‑1 (MQ=255) tgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGtt > 1:1307623‑M1/72‑133 (MQ=255) aGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg > 2:811662/1‑137 (MQ=255) aGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg < 1:811662/137‑1 (MQ=255) tcATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg > 1:951381/2‑123 (MQ=255) ccATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg < 2:951381/123‑1 (MQ=255) aaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg < 2:43994‑M1/67‑1 (MQ=255) aaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg > 1:43994‑M1/52‑118 (MQ=255) agagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTaa < 1:962831/150‑1 (MQ=255) cTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGgc < 1:177018/74‑1 (MQ=255) cTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGgc > 2:177018/1‑74 (MQ=255) tagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCttt < 2:1358479‑M1/53‑1 (MQ=255) tagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCttt > 1:1358479‑M1/33‑85 (MQ=255) ccacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAc > 1:201520/1‑98 (MQ=255) ccacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAc < 2:201520/98‑1 (MQ=255) agGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCGCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCTGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtt > 2:312404/1‑150 (MQ=255) aaaCGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGAGGGCCCGTTTTTTGTTGCCTCGCt > 1:449897/1‑150 (MQ=255) | TCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCT > NC_002947/1499300‑1499587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |