New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2103083	54 (0.960)	8 (0.210) +AATAAAGATCTACAGGTTTCAGTCGAAGTCTGTAAGTCGTT	8/184	3.6	18.8%	noncoding (76/76 nt)	PP_t23	tRNA‑Gly
	?	NC_002947	4632531 =	46 (0.820)					intergenic (+90/+69)	PP_4096/PP_t59	hypothetical protein/tRNA‑Gly
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTC  >  NC_002947/2102946‑2103229                                                                                                                                          |                                                                                                                                                   gCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACtg                                                                                                                                        >  2:336625/1‑150 (MQ=40)   cTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACtgtg                                                                                                                                      >  1:983615/1‑150 (MQ=255)   cTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACtgtg                                                                                                                                      >  1:138439/1‑150 (MQ=255)          acCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTTGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTa                                                                                                                               >  1:1056438/1‑150 (MQ=255)          acCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTa                                                                                                                               >  1:547618/1‑150 (MQ=255)            cGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATg                                                                                                                             >  1:299361/1‑150 (MQ=255)            cGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATg                                                                                                                             >  1:1167922/1‑150 (MQ=255)             gCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGc                                                                                                                            >  1:1072078/1‑150 (MQ=255)              cccTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCCCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCg                                                                                                                           >  1:291169/1‑150 (MQ=255)                 tttCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCGCGTTCCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTg                                                                                                                        >  1:832029/1‑150 (MQ=255)                      cggcggTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAgtg                                                                                                                   <  2:547618/150‑1 (MQ=255)                        gcggTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAgtggt                                                                                                                 <  1:335800/150‑1 (MQ=255)                             aaCAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTaaa                                                                                                                                             <  1:1349898/117‑1 (MQ=39)                             aaCAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTaaa                                                                                                                                             >  2:1349898/1‑117 (MQ=39)                              aCAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTCTGCGGTGCAGTGGTGGTGaa                                                                                                           >  2:1067941/1‑150 (MQ=255)                                  gggTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTc                                                                                                       <  1:336625/150‑1 (MQ=255)                                         aGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATCCTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAgg                                                                                                <  1:538695/150‑1 (MQ=255)                                         aGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTTGTGGTGAAGGTCGTAAAgg                                                                                                <  2:983615/150‑1 (MQ=255)                                              ccTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCtt                                                                                           <  2:778111/150‑1 (MQ=255)                                               cTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAgtg                                                                                                                   <  2:802952/125‑1 (MQ=255)                                               cTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAgtg                                                                                                                   >  1:802952/1‑125 (MQ=255)                                                                  ggAATAGCTCAGTTGGTAGAGCACGACCTTGCTAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAgtggtgg                                                                                                               >  1:289955/1‑110 (MQ=255)                                                                  ggAATAGCTCAGTTGGTAGAGCACGACCTTGCTAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAgtggtgg                                                                                                               <  2:289955/110‑1 (MQ=255)                                                                  ggAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGCGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGc                                                                       <  1:1002919/150‑1 (MQ=255)                                                                   gAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGATGGTCACGGACGTAAAGGCGCTTCCGGCTGAATGTGGTAAAGCt                                                                      >  2:1141211/1‑150 (MQ=21)                                                                    aaTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCtt                                                                     <  2:298415/150‑1 (MQ=255)                                                                          tCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAAtt                                                               >  1:358920/1‑150 (MQ=255)                                                                             gTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCg                                                            <  2:358920/150‑1 (MQ=255)                                                                             gTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCg                                                            <  2:291169/150‑1 (MQ=255)                                                                              ttGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCgg                                                           <  2:1167922/150‑1 (MQ=255)                                                                              ttGGTAGAGCACGACCTTGCCAAGGGCGGGGGCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCgg                                                           <  2:1056438/150‑1 (MQ=255)                                                                                 gTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGt                                                                                                                                  <  2:420796/76‑1 (MQ=255)                                                                                 gTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGt                                                                                                                                  >  1:420796/1‑76 (MQ=255)                                                                                   agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATa                                                      <  1:692204/150‑1 (MQ=255)                                                                                     agCACGACCTCGCAACGGTCGGTGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGc                                                    <  2:1018910/150‑1 (MQ=255)                                                                                       cccGACCTTGGCAAGGTCGTGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTc                                                  >  1:613897/3‑150 (MQ=255)                                                                                       cccGACCTTGGCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTc                                                  >  1:885025/3‑150 (MQ=255)                                                                                        aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCa                                                 <  2:1072078/150‑1 (MQ=255)                                                                                           aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAACGCTTCAAATTGCGGGAATAGCTCAGtt                                              <  1:518547/150‑1 (MQ=255)                                                                                                                cgAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCGTCACGCCGAACGTGTTAACGCTTCCAATTGCGGGAATAGCTCATTTGGTAGAGCACGACCTTGCCaa                         <  2:859473/150‑1 (MQ=39)                                                                                                                     tCGAGTCGCGTTTCTCGCTCTAGTTTGAATACTGTTGGGTCTATGCGGTGGAGTGGTGGTGAAGGTCGTAAAGGCGCTTCGCGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg                    <  2:1184806/150‑1 (MQ=38)                                                                                                                       gAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCt                                                   >  2:1070595/1‑117 (MQ=255)                                                                                                                       gAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCt                                                   <  1:1070595/117‑1 (MQ=255)                                                                                                                            tcGTTTCCCGCTCCGGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc             >  1:1028173/1‑150 (MQ=255)                                                                                                                            tcGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTg                                                                              >  1:1062566/1‑85 (MQ=255)                                                                                                                            tcGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTg                                                                              <  2:1062566/85‑1 (MQ=255)                                                                                                                              gTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa           <  2:885025/150‑1 (MQ=255)                                                                                                                              gTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa           <  1:1155135/150‑1 (MQ=255)                                                                                                                                  cccGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGaa                                                        <  1:201737/101‑1 (MQ=255)                                                                                                                                  cccGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGaa                                                        >  2:201737/1‑101 (MQ=255)                                                                                                                                   ccGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCGCGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCg      >  2:108365/1‑150 (MQ=255)                                                                                                                                       tCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTg                             >  1:1282538/1‑123 (MQ=255)                                                                                                                                       tCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTg                             <  2:1282538/123‑1 (MQ=255)                                                                                                                                       gccAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTCAAGGTCGTAAAGGCGCTTCATGCCGAACGTGGTGAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtc  <  2:832029/149‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                   GCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCAAATGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTC  >  NC_002947/2102946‑2103229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.