New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4075786	NA (NA)	37 (0.700)	29/252	1.1	100%	intergenic (‑328/+113)	PP_3586/tpx	transposase/2‑Cys peroxiredoxin
	?	NC_002947	= 4957611	0 (0.000)					intergenic (‑49/+114)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein

CCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCGGC  >  NC_002947/4075651‑4075935                                                                                                                                        |                                                                                                                                                      ccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATg                                                                                                                                         >  1:1016080/1‑150 (MQ=32)   tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTc                                                                                                                                       >  2:740214/1‑150 (MQ=34)      cAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTcaca                                                                                                                                    <  2:1016080/150‑1 (MQ=37)        aaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGc                                                                                                                                  >  2:918949/1‑150 (MQ=38)        aaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGc                                                                                                                                  >  1:1252307/1‑150 (MQ=38)        aaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTNTNAAAATGTCAGCGTAGCTGCGGAACTGAAGCCGTACACATCATGTTTGAAGAGCAACAGCGCAGCACGGAAGGGCTGGGGGATCTCCTACGGGGATGTCACAGc                                                                                                                                  >  1:439976/1‑150 (MQ=11)          gCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTACCAGGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCt                                                                                                                                >  1:367634/1‑150 (MQ=255)            aaaaGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCttt                                                                                                                              >  2:12119/1‑150 (MQ=255)                     cgggCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATTTCACAGCCTTTGAAAACtgt                                                                                                                     >  1:1248934/3‑150 (MQ=255)                          ccTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGc                                                                                                                <  2:1252307/150‑1 (MQ=255)                                            ttttcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGtt                                                                                              >  1:563918/1‑150 (MQ=255)                                                cttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTAcc                                                                                          >  1:618124/1‑150 (MQ=255)                                                        aaaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAaga                                                                                  >  2:166484/1‑150 (MQ=255)                                                        aaaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAaga                                                                                  <  1:193239/150‑1 (MQ=255)                                                         aaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTcac                                                                                                                                     >  1:942410/1‑98 (MQ=39)                                                         aaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTcac                                                                                                                                     <  2:942410/98‑1 (MQ=39)                                                               aGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGc                                                                           >  2:672532/1‑150 (MQ=255)                                                                  gTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGcaca                                                                        <  2:471531/150‑1 (MQ=255)                                                                    cGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAgg                                                                      <  1:245714/150‑1 (MQ=255)                                                                       tGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTa                                                                   <  1:1059660/150‑1 (MQ=255)                                                                         cGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTAAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACa                                                                 >  1:130021/1‑150 (MQ=255)                                                                                gAAGCCGTACACTTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGTCTTTTAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAcgccc                                                          <  1:740214/150‑1 (MQ=255)                                                                                gAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCCCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                 >  2:1146190/1‑111 (MQ=255)                                                                                gAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCCCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                 <  1:1146190/111‑1 (MQ=255)                                                                                 aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAcgcccg                                                         <  1:12119/150‑1 (MQ=255)                                                                                 aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAcgcccg                                                         >  2:1172661/1‑150 (MQ=255)                                                                                         cacCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGccc                                                 <  2:618124/150‑1 (MQ=255)                                                                                            cTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCAc                                              >  1:1033666/1‑150 (MQ=255)                                                                                            cTCAAGTGTGCGGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCAc                                              >  2:19643/1‑150 (MQ=255)                                                                                             tCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGc                                                   >  1:510536/1‑144 (MQ=255)                                                                                             tCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGc                                                   <  2:510536/144‑1 (MQ=255)                                                                                             tCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACg                                             >  2:1193962/1‑150 (MQ=255)                                                                                             tCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACg                                             >  2:461186/1‑150 (MQ=255)                                                                                             tCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACg                                             >  2:109272/1‑150 (MQ=255)                                                                                                 gTTTGCTTCGCCACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCTCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAAt                                         <  2:460257/150‑1 (MQ=255)                                                                                                      ctgcGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTa                                    <  1:109272/150‑1 (MQ=255)                                                                                                       tgcGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTAc                                   <  1:1193962/150‑1 (MQ=255)                                                                                                       tgcGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTAc                                   >  1:579413/1‑150 (MQ=255)                                                                                                          gcgACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTc                                >  2:480674/1‑150 (MQ=255)                                                                                                           ctaCATCGCAGCCCGGAAGGGCTAGGTGATCTCCTACGGCGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCa                               <  2:579413/148‑1 (MQ=255)                                                                                                           cgACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCa                               <  1:1172661/150‑1 (MQ=255)                                                                                                                           aaGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGcgccgc               <  2:1033666/150‑1 (MQ=255)                                                                                                                              ggCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTc            <  1:19643/150‑1 (MQ=255)                                                                                                                                   ggTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGt       >  2:1062546/1‑150 (MQ=255)                                                                                                                                        tctcCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCGGc  <  1:480674/150‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                      CCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCGGC  >  NC_002947/4075651‑4075935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.