New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477178	23 (0.410)	11 (0.280)	11/184	2.8	33.9%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477195	27 (0.700)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein

TGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTC  >  NC_002947/5477046‑5477325                                                                                                                                     |                                                                                                                                                    tggtggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTAt                                                                                                                                    <  1:1142534/150‑1 (MQ=255)    tggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgt                                                                                                                                 >  1:872132‑M1/1‑130 (MQ=255)      gCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtag                                                                                                                               >  1:975758‑M2/1‑145 (MQ=255)            gtTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgg                                                                                                                         >  2:800241‑M2/1‑139 (MQ=255)             ttGCCGGCATGCGTGGCGATGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAACCCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcggg                                                                                                                        >  1:601691‑M2/1‑138 (MQ=255)                 cGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggttta                                                                                                                    <  2:872132‑M1/150‑34 (MQ=255)                      tGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgc                                                                                                               <  1:1295981‑M1/150‑39 (MQ=255)                        cGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcga                                                                                                             >  2:395564‑M2/1‑127 (MQ=255)                               ctgctgGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGTCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgg                                                                                                                         <  1:41887‑M1/131‑29 (MQ=255)                               ctgctgGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGTCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgg                                                                                                                         >  2:41887‑M1/1‑103 (MQ=255)                                     gCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggt                                                                                                                       <  2:286566‑M1/127‑31 (MQ=255)                                     gCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggt                                                                                                                       >  1:286566‑M1/1‑97 (MQ=255)                                       gTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCTGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACg                                                                                                                                                 <  2:685960/99‑1 (MQ=255)                                       gTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCTGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACg                                                                                                                                                 >  1:685960/1‑99 (MQ=255)                                        ttcttcGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttac                                                                                                                   >  1:166054‑M2/1‑111 (MQ=255)                                        ttcttcGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttac                                                                                                                   <  2:166054‑M2/128‑18 (MQ=255)                                                     atgcGTTGCCGCAGGCGTTGGTCATGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgta                                                                                                                                <  1:165135‑M1/102‑22 (MQ=255)                                                     atgcGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgta                                                                                                                                >  2:165135‑M1/1‑81 (MQ=255)                                                              cGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcggg                                                                                                                        <  1:906851‑M1/101‑30 (MQ=255)                                                              cGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGCAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcggg                                                                                                                        >  2:906851‑M1/1‑72 (MQ=255)                                                                cAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaata                                                                                                          <  2:1109849‑M2/113‑27 (MQ=255)                                                                cAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaata                                                                                                          >  1:1109849‑M2/1‑87 (MQ=255)                                                                                       ttGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcggg                                                                                                                        <  2:1277987‑M2/76‑13 (MQ=255)                                                                                       ttGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcggg                                                                                                                        >  1:1277987‑M2/1‑64 (MQ=255)                                                                                                 cTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGAt                                    >  1:625759/1‑150 (MQ=255)                                                                                                      ccGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGc                               <  2:625759/150‑1 (MQ=255)                                                                                                         gCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCGATACAGaa                                                                                    <  2:1282472/94‑1 (MQ=255)                                                                                                         gCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCGATACAGaa                                                                                    >  1:1282472/1‑94 (MQ=255)                                                                                                            tATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctg                                                              <  2:1109849‑M1/113‑88 (MQ=255)                                                                                                            tATTCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctg                                                              >  1:1109849‑M1/1‑26 (MQ=255)                                                                                                              ttCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGc                                                     <  1:489169/120‑1 (MQ=255)                                                                                                              ttCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGc                                                     <  1:488838/120‑1 (MQ=255)                                                                                                              ttCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGc                                                     >  2:489169/1‑120 (MQ=255)                                                                                                              ttCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGc                                                     >  2:488838/1‑120 (MQ=255)                                                                                                               tCGCGGGTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacg                      >  2:395564‑M1/1‑23 (MQ=255)                                                                                                                 gcgGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgca                    <  1:1295981‑M2/150‑113 (MQ=255)                                                                                                                 gcgGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTGTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCgctgc                    >  2:750406/1‑150 (MQ=255)                                                                                                                     gTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaa                                      <  2:166054‑M1/128‑112 (MQ=255)                                                                                                                     gTAAACCCGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaa                                      >  1:166054‑M1/1‑17 (MQ=255)                                                                                                                      tAAACCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccg               <  2:872132‑M2/150‑118 (MQ=255)                                                                                                                         aCCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgc                                   <  2:286566‑M2/127‑98 (MQ=255)                                                                                                                         aCCCGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgc                                   >  1:286566‑M2/1‑30 (MQ=255)                                                                                                                          cccGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaa                                                                                     >  1:1277987‑M1/1‑12 (MQ=255)                                                                                                                          cccGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaa                                                                                     <  2:1277987‑M1/76‑65 (MQ=255)                                                                                                                          cccGCTCCTACGataagcgcgatcccgtgcgtaggagcggggttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcatcgccacgcatgccggcaa           >  1:601691‑M1/1‑12 (MQ=255)                                                                                                                          cccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttgcccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcg                                                            >  2:906851‑M2/1‑29 (MQ=255)                                                                                                                          cccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcg                                                            <  1:906851‑M2/101‑73 (MQ=255)                                                                                                                          cccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGaa           >  1:142760/1‑150 (MQ=255)                                                                                                                           ccGCTCCTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaac          >  2:800241‑M1/1‑11 (MQ=255)                                                                                                                           ccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacagacaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcag                             <  1:41887‑M2/131‑104 (MQ=255)                                                                                                                           ccGCTCCTACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacagacaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcag                             >  2:41887‑M2/1‑28 (MQ=255)                                                                                                                           ccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAg                           <  2:149276/133‑1 (MQ=255)                                                                                                                           ccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAg                           >  1:149276/1‑133 (MQ=255)                                                                                                                           ccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAAt          >  1:892902/1‑150 (MQ=255)                                                                                                                           ccGCTCCTACGCACGGGATCACGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAAt          >  1:1031131/1‑150 (MQ=255)                                                                                                                              cTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGa       >  2:87477/1‑150 (MQ=255)                                                                                                                               tCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAg                                                                             <  2:1174179/79‑1 (MQ=255)                                                                                                                               tCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAg                                                                             >  1:1174179/1‑79 (MQ=255)                                                                                                                               tCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAg      <  2:142760/150‑1 (MQ=255)                                                                                                                                ccTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAgg     <  2:892902/150‑1 (MQ=255)                                                                                                                                 cTACGataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaacaccagc    >  1:975758‑M1/1‑5 (MQ=255)                                                                                                                                  tACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcat                                                   >  2:165135‑M2/1‑21 (MQ=255)                                                                                                                                  tACGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacatgaccaacgcctgcggcaacgcat                                                   <  1:165135‑M2/102‑82 (MQ=255)                                                                                                                                  tACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGt   >  2:550250/1‑150 (MQ=255)                                                                                                                                   aCGCACGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaacaccagcca  >  1:872132‑M2/1‑20 (MQ=255)                                                                                                                                     |                                                                                                                                                    TGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTC  >  NC_002947/5477046‑5477325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.