| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6006595 = | 26 (0.460) | 15 (0.370) | 14/194 | 2.3 | 58.9% | intergenic (+7/+92) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | 6006679 = | 2 (0.050) | intergenic (+91/+8) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATG > NC_002947/6006602‑6006816 | TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCgg < 1:650712‑M1/115‑1 (MQ=255)TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCgg > 2:650712‑M1/1‑115 (MQ=255) GGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt < 1:835591‑M1/117‑1 (MQ=255) GGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt > 2:835591‑M1/1‑117 (MQ=255) TCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAAccgc < 1:1127274‑M1/150‑1 (MQ=255) GCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCa > 2:1055536‑M1/1‑131 (MQ=255) GCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCa < 1:1055536‑M1/131‑1 (MQ=255) cccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATcc > 1:632351‑M2/64‑108 (MQ=255) cccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATcc < 2:632351‑M2/45‑1 (MQ=255) ccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCaa < 1:344522‑M2/12‑1 (MQ=255) ccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCaa > 2:344522‑M2/63‑74 (MQ=255) gctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCGAATCCATTgcc > 1:625331‑M2/61‑111 (MQ=255) gctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCGAATCCATTgcc < 2:625331‑M2/51‑1 (MQ=255) GCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAAc < 1:1196857‑M1/150‑1 (MQ=255) tcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt > 1:258339‑M2/59‑106 (MQ=255) tcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt < 2:258339‑M2/48‑1 (MQ=255) TCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCg < 2:924761‑M1/150‑1 (MQ=255) cccacaggtcgtatgccctgtacctgtggcagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAACACGCGGCAGGATTTCCACATCCGTCAAATCCATTGCCGCCACCTCGCTTTCGAGGAAGGCACTCATCCGCCGCAACCGc > 1:658228‑M2/58‑150 (MQ=255) ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTc > 1:1174266‑M2/57‑115 (MQ=255) ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTc < 2:1174266‑M2/59‑1 (MQ=255) ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGc < 1:694527‑M2/61‑1 (MQ=255) ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGc > 2:694527‑M2/57‑117 (MQ=255) CCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGc < 1:109642‑M1/130‑1 (MQ=255) CCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGc > 2:109642‑M1/1‑130 (MQ=255) CCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt < 1:370427‑M1/150‑1 (MQ=255) CACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTc < 2:723013‑M1/150‑1 (MQ=255) ACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTg < 2:985116‑M1/103‑1 (MQ=255) ACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTg > 1:985116‑M1/1‑103 (MQ=255) ACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcg < 2:253028‑M1/150‑1 (MQ=255) gtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcgccgc > 2:527728‑M2/51‑150 (MQ=255) TACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTgcc > 2:977534‑M1/1‑100 (MQ=255) TACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTgcc < 1:977534‑M1/100‑1 (MQ=255) TACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTc > 2:66512‑M1/1‑108 (MQ=255) TACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTc < 1:66512‑M1/108‑1 (MQ=255) aGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCg > 1:608690/1‑150 (MQ=255) ggCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGcc > 1:883453/1‑150 (MQ=255) ccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCgg < 2:592607‑M2/108‑1 (MQ=255) cctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGcgcg > 2:1094380‑M2/36‑150 (MQ=255) cctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGcgcg > 1:413575‑M2/36‑150 (MQ=255) ctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCgg > 1:977831‑M2/35‑150 (MQ=255) tgtgggagcgggcgagcccgcggagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATtgctgc < 1:15006‑M2/53‑1 (MQ=255) tgtgggagcgggcgagcccgcggagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTgccgc > 2:15006‑M2/34‑86 (MQ=255) tgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGc > 2:1060967‑M2/34‑150 (MQ=255) tgtgggagcgggcgagcacgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGc < 2:413575‑M2/117‑1 (MQ=255) tgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCca > 1:1307245‑M2/32‑150 (MQ=255) gcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCa < 1:924761‑M2/124‑1 (MQ=255) gggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAg < 1:8046‑M2/125‑1 (MQ=255) gggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAg > 2:8046‑M2/25‑149 (MQ=255) gcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGTGTGCGCGGCCACACCAGgta < 1:527728‑M2/128‑1 (MQ=255) gcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCACCGCCTCGCCGGGTGCGCGGCCACACCAGgta < 2:370427‑M2/128‑1 (MQ=255) gaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATg > 1:692898‑M2/13‑150 (MQ=255) aggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAAcc < 2:604463‑M2/91‑1 (MQ=255) aggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAAcc > 1:604463‑M2/9‑99 (MQ=255) | TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATG > NC_002947/6006602‑6006816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |