| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 699,725 | 0 | A | G | 58.9% | 29.4 / 81.8 | 74 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (16/14); new base G (23/20); total (39/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.72e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTT > NC_002947/699581‑699805 | tCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGaa < 1:1150354/150‑1 (MQ=255) gCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAacac < 2:313238/150‑1 (MQ=255) gCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAacac > 2:721506/1‑150 (MQ=38) cGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACAcc < 1:559958/150‑1 (MQ=255) tCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGtt < 2:1128559/150‑1 (MQ=255) aTCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCa > 2:389555/1‑150 (MQ=38) tCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCAc > 1:802363/1‑150 (MQ=39) ggCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCActgc > 2:311096/2‑150 (MQ=37) cGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCActgc > 2:22726/1‑150 (MQ=38) cGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCActgc > 2:993224/1‑150 (MQ=39) cGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCActgc > 2:717384/1‑150 (MQ=39) gCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCActgct < 1:662885/150‑1 (MQ=255) gCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCActgct > 2:398030/1‑150 (MQ=38) cTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCActgctg < 1:717384/150‑1 (MQ=38) ttGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCtgg > 1:848169/1‑150 (MQ=38) tGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCtggt < 1:398030/150‑1 (MQ=38) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg < 1:599384/150‑1 (MQ=38) tCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTTATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGAt > 1:1062883/1‑150 (MQ=255) caccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCa > 1:647145/1‑150 (MQ=255) ccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAgg > 1:211029/1‑150 (MQ=38) ccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGTTGGTGGATCAgg > 2:1166802/1‑150 (MQ=255) tttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGTTGGTGGATCAGGCTaa < 1:1166802/150‑1 (MQ=255) tttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTaa < 1:993224/150‑1 (MQ=39) tttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCATTCTTTAAAAACTCAGCTATTAGTGGTAAATA‑AG‑CTGAACACCAGTTTCACTGCTGGTGGATCAGGCTaa < 1:243684/150‑1 (MQ=11) ttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAg < 1:1274028/150‑1 (MQ=255) ttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAg < 2:647145/150‑1 (MQ=255) ttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAg < 2:1168185/150‑1 (MQ=39) ccGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTaa > 2:1311202/1‑150 (MQ=38) tACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCtggt > 1:570547/1‑130 (MQ=40) tACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCtggt < 2:570547/130‑1 (MQ=40) cGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAttt < 1:305082/150‑1 (MQ=255) cAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 1:389555/150‑1 (MQ=255) cAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 1:22726/150‑1 (MQ=255) gTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGaa < 1:975621/105‑1 (MQ=255) gTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGaa > 2:975621/1‑105 (MQ=40) gTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 2:847890/148‑1 (MQ=38) gTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt > 1:847890/1‑148 (MQ=38) cTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTCCCGATGGATCAGTCTAAGGTAAAACTTGTCAGTTc > 2:134448/1‑150 (MQ=11) ttGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 1:134448/150‑1 (MQ=34) gTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGc > 2:489156/1‑150 (MQ=35) tCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCt > 1:1093572/1‑150 (MQ=25) tCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt > 1:1224394/1‑140 (MQ=37) tCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 2:1224394/140‑1 (MQ=37) tCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCt > 1:570541/1‑150 (MQ=35) cAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGttt < 2:641400/105‑1 (MQ=38) cAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGttt > 1:641400/1‑105 (MQ=38) aGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCg > 2:820098/1‑150 (MQ=25) aGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCg > 1:1360580/1‑150 (MQ=25) gAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGt > 2:809973/1‑101 (MQ=255) gAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGt < 1:809973/101‑1 (MQ=255) gAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGa < 2:845783/139‑1 (MQ=37) gAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGa > 1:845783/1‑139 (MQ=37) aaCTTAGAAATGAACATTCAGCGCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGttt < 1:657005/102‑1 (MQ=255) aaCTTAGAAATGAACATTCAGCGCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGttt > 2:657005/1‑102 (MQ=255) aCTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTg < 1:686061/90‑1 (MQ=255) aCTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTg > 2:686061/1‑90 (MQ=255) aCTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaaa < 2:570541/150‑1 (MQ=35) ttAGAAATGAACATTCCGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAg < 1:851908/122‑1 (MQ=255) ttAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAg > 2:851908/1‑122 (MQ=25) aaaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTGAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCGCTGCTGGTGGATCAGGCTAAGGTAAAATTtg > 1:1335039/1‑128 (MQ=255) aaaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGTATCAGGCTAAGGTAAAATTtg < 2:1335039/128‑1 (MQ=255) aaaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCaa > 2:879838/1‑150 (MQ=25) aaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtg > 1:1283479/1‑105 (MQ=255) aaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtg < 2:1283479/105‑1 (MQ=255) aaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAAc < 1:1048506/150‑1 (MQ=35) aTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaaa < 1:1154804/142‑1 (MQ=25) aTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaaa > 2:1154804/1‑142 (MQ=25) gAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 1:791030/125‑1 (MQ=25) gAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt > 2:791030/1‑125 (MQ=37) aTTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTaa < 1:1093547/109‑1 (MQ=255) aTTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTaa > 2:1093547/1‑109 (MQ=38) aTTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGaa > 1:1230811/1‑150 (MQ=25) aTTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGaa > 1:350122/1‑150 (MQ=25) cAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAAttt > 1:1208537/1‑150 (MQ=32) | TCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAT‑‑GTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTT > NC_002947/699581‑699805 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |