| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,988,967 | 0 | A | . | 43.3% | 165.6 / 148.0 | 90 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| Reads supporting (aligned to +/- strand): ref base A (22/29); new base . (21/18); total (43/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAA > NC_002947/5988818‑5989113 | gcgcgGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCa < 1:450032/150‑1 (MQ=255)gcgcgGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCa < 2:184374/150‑1 (MQ=255) ggcgCTTCGCGGGTAAACCCGCTCGTGCGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGGCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGaaa < 2:490203/150‑1 (MQ=255) ggcgCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGaaa < 2:446427/150‑1 (MQ=255) cTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGaaacaca < 2:20209/150‑3 (MQ=255) cTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGaaacaaa > 1:20209/1‑150 (MQ=255) cTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCAAGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGaaacaaa < 1:671861/150‑1 (MQ=255) cTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGTGCGCGACTGGTGCAG‑GAGGGACTGGCC‑Gaaacaaac < 2:421983/150‑1 (MQ=12) ttCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCTAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGaaacaaac < 1:607558/150‑1 (MQ=255) cgcgGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCCTTGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTa < 2:888319/150‑1 (MQ=2) gcgGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAg < 2:145683/150‑1 (MQ=2) gggTAAACCCGCTCCTACGTTTGTTTCTGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGa > 2:1342043/1‑150 (MQ=2) aaCCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCgg < 1:471408/150‑1 (MQ=255) aCCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCggg < 1:1198024/150‑1 (MQ=255) cccGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGt > 1:280647/1‑150 (MQ=255) cccGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGtt > 1:47162/1‑150 (MQ=2) ccGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCTCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGtt > 1:313898/1‑150 (MQ=255) ccGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAg > 1:1013000/1‑141 (MQ=255) ccGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAg < 2:1013000/141‑1 (MQ=255) ccGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGtt > 1:993758/1‑150 (MQ=255) ccGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAACCAAGGCGGTCGCGCGCGACT‑GAACAGATATTAAGTGGCC‑GAAACAAACGTAGGAGCGGGttt > 2:331068/1‑150 (MQ=12) gCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAc < 2:462840/150‑1 (MQ=2) cTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAc > 1:1045830‑M2/1‑149 (MQ=255) tCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAccc < 2:1120469/150‑1 (MQ=2) cTACGTTTTTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCcgc < 2:1349424/150‑1 (MQ=2) cTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccg > 1:473191‑M2/1‑146 (MQ=255) cTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccg > 2:436735‑M2/1‑146 (MQ=255) cTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGCCTGGCC‑GAAACAAACGTAGGAGCGGCTTTACCcgc > 2:461263/1‑150 (MQ=2) cTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGCCGCGCGCGACTGGTGCAG‑GAGGGACTGACC‑GGAACAAACGTAGGAGCGGGttccgccgc > 2:31953/1‑143 (MQ=255) gtttgtttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGAATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaa < 2:80552‑M2/150‑9 (MQ=255) gtttgtttCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAg > 1:534602/1‑150 (MQ=14) gtttgtttCGGGCCAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAg > 1:1373213/1‑150 (MQ=9) ttgtttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCa > 1:410856/1‑116 (MQ=255) ttgtttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCa < 2:410856/116‑1 (MQ=255) ttgtttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagc < 1:38136‑M2/150‑11 (MQ=255) gtttCGGGCCAATTATTCCTGCGGGATTTGCGCGCGGC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGAGTTGTGCAG‑GAGGGTCTGAGC‑CAACCAAACGTAGGAGCGGGTTTACCCGCGCAGcgcc > 2:330802/1‑150 (MQ=2) tttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCCCGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgcc < 2:639034‑M2/150‑14 (MQ=255) tttCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgcc < 1:653333‑M2/150‑14 (MQ=255) ggCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAATGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcccg < 2:334309‑M2/150‑19 (MQ=255) ggCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcg < 2:1053797‑M2/150‑19 (MQ=255) ccAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcggg < 1:321220‑M2/150‑21 (MQ=255) ccAATTATTCCTGCGGGATTTGCGCGCGAC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCgcgggc > 2:470950/1‑150 (MQ=2) ttATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggc < 2:947397‑M2/150‑25 (MQ=255) aTTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGAATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcccgcgcggcgc > 1:80552‑M2/1‑124 (MQ=255) tgtgGGACGCGCACGCGAGCCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGc > 2:344372/1‑113 (MQ=255) tgtgGGACGCGCACGCGAGCCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGc < 1:344372/113‑1 (MQ=255) tgtgGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAATGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcccgcgcggcgcttcgc > 1:334309‑M2/1‑119 (MQ=255) aCGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATg < 2:993758/150‑1 (MQ=255) gcgcgaC‑CGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctg < 1:1068516‑M2/149‑45 (MQ=255) cccccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAAc > 2:462682/1‑150 (MQ=255) gccttGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacag < 1:473503‑M2/135‑39 (MQ=255) ccgTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgaactggctgcgctcgatctcacaggcgctgaaaatcctc > 1:330802‑M2/1‑97 (MQ=255) cccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTa < 2:321220/150‑1 (MQ=255) cttggGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctcc > 2:47162‑M2/3‑96 (MQ=255) cttggGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctcc > 1:931548‑M2/3‑96 (MQ=255) cTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATc < 1:462682/150‑1 (MQ=255) aCGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGc > 1:132783/1‑150 (MQ=255) tgtctcgATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacac < 2:192662‑M2/147‑64 (MQ=255) gtctcGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctca > 2:1250548‑M2/3‑86 (MQ=255) gtctcGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctca < 1:1250548‑M2/119‑36 (MQ=255) tctCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacct < 1:643519‑M2/149‑66 (MQ=255) tctCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaa < 1:886865‑M2/143‑60 (MQ=255) tctCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaa > 2:886865‑M2/2‑85 (MQ=255) cTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGaaacaaac < 2:1058653/70‑1 (MQ=255) cTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGaaacaaac > 1:1058653/1‑70 (MQ=255) tCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcc > 1:1342043‑M2/1‑83 (MQ=255) cGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcccgcg < 2:601336‑M2/102‑21 (MQ=255) cGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcccgcg > 1:601336‑M2/1‑82 (MQ=255) atatCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGaa < 2:653333/150‑1 (MQ=255) ccgcaccggacaaacAAGGCGGTCGCGCGCGACTGGTGCAG‑CAGGGGCTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattc > 2:534602‑M2/7‑77 (MQ=255) cgtcgtACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaa > 2:1068516‑M2/1‑74 (MQ=255) tACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCa > 2:7096/1‑150 (MQ=255) tACAAACAAGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccg < 2:170373‑M2/150‑82 (MQ=255) aaacaaGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCa < 1:295607/125‑1 (MQ=255) aaacaaGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCa > 2:295607/1‑125 (MQ=255) aaacaaGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGCttcgc > 2:61474/1‑93 (MQ=17) aaacaaGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGCttcgc < 1:61474/97‑5 (MQ=17) aacaaGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctagatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtcca < 1:1065401‑M2/150‑86 (MQ=255) acaaGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTc < 2:313898/150‑1 (MQ=255) acaaGGCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatcccacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccac < 2:339314‑M2/150‑87 (MQ=255) ggCGGTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaa < 1:1041655‑M2/150‑91 (MQ=255) gCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGTGCGCCCAAAAAc < 2:1134127/110‑1 (MQ=255) gCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGTCCGCCCAAAAAc > 1:1134127/1‑110 (MQ=255) gTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgt < 1:1342649‑M2/138‑83 (MQ=255) gTCGCGCGCGACTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgt > 2:1342649‑M2/1‑56 (MQ=255) gcgcgaCTGGTGCAG‑GAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaac > 1:192662‑M2/1‑51 (MQ=255) ggCACAG‑GCGGGCCTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCAAGCTCATGGGCGCCCAAAAACCATCGCCAGCCACCTGGAAGCCATCCTCCAATTCCCTGACGATCACCTCGCCGACa > 2:65396/1‑150 (MQ=25) ctag‑gaggGATTGGCCAGAAACCAACGAAGGCGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGa < 2:1347441/148‑1 (MQ=255) caG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAc < 1:947397/150‑1 (MQ=255) g‑gaggGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc > 2:1232102/1‑150 (MQ=255) g‑gaggGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcag > 1:1347441/1‑148 (MQ=255) gaggGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaaaaa > 1:816848/1‑86 (MQ=255) gaggGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaaaaa < 2:816848/86‑1 (MQ=255) gggATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGaa < 2:132783/150‑1 (MQ=255) gCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACaa > 1:172287/1‑150 (MQ=255) | GCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAG‑CCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAG‑GAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAA > NC_002947/5988818‑5989113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |