| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 90357 | 69 (1.830) | 8 (0.230) | 8/246 | 3.1 | 11.9% | intergenic (+32/+90) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 90414 | 56 (1.630) | intergenic (+89/+33) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCCGGCCGCTGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/90200‑90357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccatcgcgacGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCG < NC_002947/90414‑90266 TGCCGGCCGCTGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCC < 2:811298/150‑1 CCGGCCGCTGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCAT > 1:105972/1‑150 GTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTG < 2:210724/149‑1 GTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGAAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTG > 1:210724/1‑149 TACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTG < 1:247648/150‑1 GGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGT < 2:575997/150‑1 AGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTC > 1:783186/1‑133 AGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTC < 2:783186/133‑1 TTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGC < 1:925346/105‑1 TTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGC > 2:925346/1‑105 acCCCATCGCGACGCAAGGCCGCTCCCACATGGGCAGCACTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAA < 1:8141/148‑1 GCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAAC < 1:73304/150‑1 CCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACG < 2:682717/150‑1 ATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCC < 2:421094/150‑1 GCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAACGCGGCCCCAAAAACTCAAAGGAGGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCAC > 2:871757/1‑150 GACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCGCAAACCGCTCGATCAACGCCCCCCGC > 2:141998/1‑150 CGCAAGGCAGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGGCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCc > 2:212708/1‑149 TGCCGGCCGCTGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/90200‑90357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccatcgcgacGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCG < NC_002947/90414‑90266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |