| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 401796 = | 49 (1.300) | 8 (0.240) +ATGCACCGCGTCGCTTGT |
8/234 | 2.9 | 18.2% | intergenic (+320/+109) | PP_0334/PP_0335 | transposase/glutathione S‑transferase family protein |
| ? | NC_002947 | = 6060511 | 34 (0.900) | intergenic (+91/+90) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATGGCCGCTTGA > NC_002947/401647‑401945 | ttCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAg < 1:731526/150‑1 (MQ=255) tCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGTTAAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCAc > 1:98252/1‑150 (MQ=255) aTGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCgg < 2:773965/150‑1 (MQ=255) cgcattaagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgacgcggtgcatGGCACCGGCTTCGCCg > 1:781612‑M1/119‑134 (MQ=255) cgcattaagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgacgcggtgcatGGCACCGGCTTCGCCg < 2:781612‑M1/16‑1 (MQ=255) cTATGTTTAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGc > 2:378230/1‑146 (MQ=255) cTATGTTTAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGc < 1:378230/146‑1 (MQ=255) cTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTccc > 1:678366/1‑150 (MQ=255) cTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTccc > 1:267922/1‑150 (MQ=255) tATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCa > 1:634916/1‑150 (MQ=255) cAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGAAAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGcc < 1:265552/150‑1 (MQ=255) aaaaaaGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGcgaagc > 2:836205/1‑111 (MQ=255) aaaaaaGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGcgaagc < 1:836205/116‑6 (MQ=255) gcagcTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGCCTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACcaca < 1:804354/150‑1 (MQ=255) ctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgacgcggtgcatGGCACCGGCTTCGCCGGTGTTCGCgg < 2:835182‑M1/26‑1 (MQ=255) ctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgacgcggtgcatGGCACCGGCTTCGCCGGTGTTCGCgg > 1:835182‑M1/96‑121 (MQ=255) agcTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGa < 2:678366/150‑1 (MQ=255) cTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATa > 2:408927/1‑150 (MQ=255) tAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGACCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAg > 2:890014/1‑150 (MQ=255) gACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCg < 1:31387/150‑1 (MQ=255) ggCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGa > 1:513941/1‑136 (MQ=255) ggCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGa < 2:513941/136‑1 (MQ=255) ggCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACtgtg < 2:620617/150‑1 (MQ=255) ttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcgtgcccgcgaaacaagcgacgcggtgcatGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTc < 2:824780‑M1/38‑1 (MQ=255) ttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcgtgcccgcgaaacaagcgacgcggtgcatGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTc > 1:824780‑M1/78‑115 (MQ=255) tcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaaacaagcgacgcggtgcatGGCACCGGCTTCGCCGGTGTTcgcg < 1:737852‑M1/25‑1 (MQ=255) tcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaaacaagcgacgcggtgcatGGCACCGGCTTCGCCGGTGTTcgcg > 2:737852‑M1/74‑98 (MQ=255) atacataGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCtt > 1:865964/1‑150 (MQ=255) atacataGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCtt < 1:408927/150‑1 (MQ=255) atacataGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGAGTCAGGCACCGGCTTCGCCGGTTTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAAATAAGTAACACTGTGGAAAACCtt > 1:88260/1‑150 (MQ=39) acataGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGt > 1:265508/1‑150 (MQ=255) gACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCGCGCGAACACACATAATGGGGAGTGAGGCAACGGCTTCGCCGGTCTTCGCGGGCACGCCCGCTCCCAAAAGCCAACCACAGATAGCGGACACTGTGGAAAACATTGTAGGaa > 2:93165/1‑149 (MQ=38) aGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCgg < 1:93165/150‑1 (MQ=255) tgtgGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCTAACACTGTGGAAAACCTTGTAGGAGCGGGt > 1:603007/1‑150 (MQ=255) gggCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGATCGCGGGCGCGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTa > 2:921609/1‑150 (MQ=255) gCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAAAACTGTGGAAAACCTTGTAGGAGCGGGTTTAcc > 1:197129/1‑150 (MQ=255) catacataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAg < 2:634916/150‑1 (MQ=255) atacataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGt > 1:154393/1‑127 (MQ=255) atacataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGt < 2:154393/127‑1 (MQ=255) atacataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTAAACCcgctccta > 2:10560/1‑145 (MQ=255) tacataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTAAACCcgctcctac < 1:10560/150‑7 (MQ=255) acataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCAACGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAgggg > 2:229959/1‑150 (MQ=255) agaaGCGGGCTGGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCACACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCt > 2:698912/4‑150 (MQ=255) ggCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCa > 2:468051/1‑150 (MQ=255) cTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACt < 2:267922/150‑1 (MQ=255) ttGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAg < 1:889025/133‑1 (MQ=255) ttGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAg > 2:889025/1‑133 (MQ=255) gCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGgc < 2:265508/150‑1 (MQ=255) acacacATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCACACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGc < 1:698912/150‑1 (MQ=255) cacaTAGTGAGGTGTCAGGCACCGGCTTCGACGGTGTTCGGGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTCAGGCCACTGGCGCTGTAGCGAc < 2:22291/150‑1 (MQ=255) cacaTAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGAc < 2:721510/150‑1 (MQ=255) cacaTAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGAc < 1:229959/150‑1 (MQ=255) acaTAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGAcc > 1:609289/1‑150 (MQ=255) acaTAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGAcc > 2:845554/1‑150 (MQ=255) aTAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGc > 2:361775/1‑46 (MQ=255) aTAATGGGGTGTCAGGCACAGGCTTCGCCGGTGTTCGCGGGCACGc < 1:361775/46‑1 (MQ=255) aGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATGGCCGCTTg > 2:638836/1‑150 (MQ=255) ggCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATGGCCGCTTGa > 1:220193/1‑150 (MQ=255) | TTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATGGCCGCTTGA > NC_002947/401647‑401945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |