New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1149994	45 (1.190)	13 (0.380)	12/246	2.1	25.0%	intergenic (‑235/+22)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	2071272 =	37 (1.080)					intergenic (+181/+46)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor

GAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCC  >  NC_002947/2071128‑2071420                                                                                                                                                 |                                                                                                                                                     gagGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCt                                                                                                                                                 <  2:271801/150‑1 (MQ=255)  agGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTc                                                                                                                                                <  2:399787/150‑1 (MQ=255)       ggcggGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCcaca                                                                                                                                           >  1:377477/1‑150 (MQ=255)                               tCGCTTTTCACGGCAATTGTGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCTAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCgg                                                                                                                   >  2:232362/1‑150 (MQ=25)                                   ttttCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCg                                                                                                                    >  2:731098/1‑145 (MQ=255)                                   ttttCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCg                                                                                                                    <  1:731098/145‑1 (MQ=255)                                      tCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGc                                                                                                            <  2:145666/150‑1 (MQ=255)                                        aGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCaa                                                                                                          >  2:597326/1‑150 (MQ=255)                                        aGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCaa                                                                                                          <  2:377477/150‑1 (MQ=255)                                            ccATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCTGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTa                                                                                                      >  1:568909/1‑150 (MQ=255)                                              aTTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGa                                                                                                    <  1:597326/150‑1 (MQ=255)                                                                cccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTcg                                                                                                                                      >  1:391506/1‑98 (MQ=255)                                                                cccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTcg                                                                                                                                      <  2:391506/98‑1 (MQ=255)                                                                cccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGcc                                                                                                                 <  2:212830/119‑1 (MQ=255)                                                                cccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGcc                                                                                                                 >  1:212830/1‑119 (MQ=255)                                                                cccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaa                                                                                  >  1:204491/1‑150 (MQ=255)                                                                cccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaa                                                                                  >  2:728611/1‑150 (MQ=255)                                                                cccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaa                                                                                  <  2:37546/150‑1 (MQ=255)                                                                  cATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATGTAGAAGCTGATCGaagccgaaagc                                                                                >  1:407340/1‑150 (MQ=255)                                                                        gACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCg                                                                          <  2:204491/150‑1 (MQ=255)                                                                        gACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCg                                                                          <  1:118676/150‑1 (MQ=255)                                                                           gggagcgggctttcccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGc                                                                                                                             >  2:609848‑M2/71‑96 (MQ=255)                                                                           gggagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGc                                                                                                                             <  1:609848‑M2/26‑1 (MQ=255)                                                                             aaGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGTAGGTGATCGAAGCCGAAAGCCGAGCGGTAcg                                                                     >  1:430260/1‑150 (MQ=255)                                                                             aaGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcg                                                                     >  1:91175/1‑150 (MQ=255)                                                                                   gCTTGCCGCCGAAACCAACACCGTGGCGGATGGCACGGGCTTTGCCCGTGCTCGCGGGCCTGCGCGCTCCCACAGGTCGCGAAAGGGCAGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGc                                                               <  2:430260/150‑1 (MQ=255)                                                                                   gCTTGCCCGCGAAGCCAACACCGTGGTGGAAGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGc                                                               <  2:834883/150‑1 (MQ=255)                                                                                     ttgcccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGccc                                                             >  2:231786‑M2/61‑150 (MQ=255)                                                                                         ccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagTCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTg                                                                >  2:468779‑M2/57‑143 (MQ=255)                                                                                         ccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagTCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTg                                                                <  1:468779‑M2/87‑1 (MQ=255)                                                                                         ccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagc                                                                                       >  1:356518‑M2/57‑120 (MQ=255)                                                                                         ccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagc                                                                                       <  2:356518‑M2/64‑1 (MQ=255)                                                                                         ccGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTg                                                         >  1:7067/1‑150 (MQ=255)                                                                                          cgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGt                                                                 >  2:896040‑M2/56‑141 (MQ=255)                                                                                          cgcgaacacgggcgaagcccgggccatccaccacggtgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGt                                                                 <  1:896040‑M2/86‑1 (MQ=255)                                                                                                 ccAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGt                                                 >  2:876860/1‑150 (MQ=255)                                                                                                  cAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCCAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTa                                                <  2:91175/150‑1 (MQ=255)                                                                                                   aaCACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGa                                                                                              >  1:594091/1‑103 (MQ=255)                                                                                                   aaCACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGa                                                                                              <  2:594091/103‑1 (MQ=255)                                                                                                    acacCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGTCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGt                                              >  2:108783/1‑150 (MQ=255)                                                                                                        cGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATc                                          >  2:879877/1‑150 (MQ=255)                                                                                                            gtggATGGCACGGGCTTCGCCCGTGTTCGCTGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATccccc                                      <  2:568909/150‑1 (MQ=255)                                                                                                                        ggCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGTCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATccccc                          <  1:108783/150‑1 (MQ=255)                                                                                                                         gCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCca                         <  1:631371/150‑1 (MQ=255)                                                                                                                         cacggtgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCca                         >  1:73172‑M2/25‑150 (MQ=255)                                                                                                                              tgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCg                                                                                                                    <  1:890114‑M2/35‑1 (MQ=255)                                                                                                                              tgttggcttcgcgggcaagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCg                                                                                                                    >  2:890114‑M2/20‑54 (MQ=255)                                                                                                                                 tggcttcgcgggcaagCCCGCGCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCgcgc                 <  1:231786‑M2/134‑1 (MQ=255)                                                                                                                                  gtgtTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGcc                >  2:733472/1‑150 (MQ=255)                                                                                                                                   tgtTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCa               >  1:913680/1‑150 (MQ=255)                                                                                                                                              aagCCGGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATcgc                   >  2:15255‑M2/4‑135 (MQ=255)                                                                                                                                              aagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAgg                                                  >  1:181904‑M2/4‑104 (MQ=255)                                                                                                                                              aagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAgg                                                  <  2:181904‑M2/101‑1 (MQ=255)                                                                                                                                              aagCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATcgc                   <  1:15255‑M2/132‑1 (MQ=255)                                                                                                                                               agCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTc   >  2:401101‑M2/3‑150 (MQ=255)                                                                                                                                                gCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATccc                            <  2:502317‑M2/123‑1 (MQ=255)                                                                                                                                                gCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATccc                            >  1:502317‑M2/2‑124 (MQ=255)                                                                                                                                                gCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTcc  >  2:354992‑M2/2‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCC  >  NC_002947/2071128‑2071420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.