| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4896423 = | 39 (1.030) | 12 (0.380) | 11/228 | 2.1 | 31.2% | intergenic (+11/‑197) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4896512 = | 20 (0.630) | intergenic (+100/‑108) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
GCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTT > NC_002947/4896365‑4896633 | gcggcgTTCTGTTCTCGCTGTGTGAATGGGTTGTGTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGGGCGGACCGTGCGCGGGCTGCCGTAGGAGCGGGTTTACCCGCGAAGATGCCGGcaca < 1:401563/150‑1 (MQ=38) gcgTTCTGTTCTCGCTGTGGGAATAGGTTGTTTCCCAAAACGTGATAGCGCCTGCGCCGGCCTGTTCGCGGGTAGATGCGCTCGTAGAGGCGCGTGCCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGc > 2:106266/1‑150 (MQ=38) tcGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAAc > 2:893147/1‑150 (MQ=255) tgGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGc > 1:34393/1‑150 (MQ=255) gAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTGCGCGGGTAAATCCGCTCCTACAGGCCCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtt > 2:501608/1‑150 (MQ=255) gggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtttttt < 1:893147/150‑1 (MQ=255) gcCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAacccacc < 2:701310/150‑1 (MQ=255) CTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtttttt < 2:753076‑M1/113‑1 (MQ=255) CTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtttttt > 1:753076‑M1/1‑113 (MQ=255) TTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTgg < 2:583825‑M1/150‑1 (MQ=255) gcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGCATAACCaaa > 1:459993‑M2/78‑98 (MQ=255) gcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGCATAACCaaa < 2:459993‑M2/21‑1 (MQ=255) GCGGGTAAATCAGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATaa < 1:181641‑M1/93‑1 (MQ=255) GCGGGTAAATCAGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATaa > 2:181641‑M1/1‑93 (MQ=255) acccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGcccc > 1:249110‑M2/70‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCaaa < 2:269115/89‑1 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCaaa > 1:269115/1‑89 (MQ=255) gctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTtata < 1:567418‑M2/62‑1 (MQ=255) gctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTtata > 2:567418‑M2/66‑127 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAaca > 2:883083/1‑150 (MQ=255) tcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 2:143242‑M2/64‑150 (MQ=255) ccTACAGGCGCGGACCGTGCGCGGCCCCCCGTAGGAGCGGCTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAccc < 1:850380/150‑1 (MQ=255) ctacgggggaccgcgcacggtccgcgcctgtaggtgcggatttacccgcgaagaggccggcACAGGCAGAAGCATAAc > 2:168020‑M2/62‑78 (MQ=255) ctacgggggaccgcgcacggtccgcgcctgtaggtgcggatttacccgcgaagaggccggcACAGGCAGAAGCATAAc < 1:168020‑M2/17‑1 (MQ=255) ctacgggggaccgcgcacggtccgcgcctgtaggagcgggtttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAc > 1:860120‑M2/62‑101 (MQ=255) ctacgggggaccgcgcacggtccgcgcctgtaggagcgggtttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAc < 2:860120‑M2/40‑1 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCt > 1:483002/1‑150 (MQ=255) aGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCAAACACCCTTCaa > 1:134667/1‑150 (MQ=255) aGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTGTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCaa > 1:833956/1‑150 (MQ=255) ggACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAAc < 1:594042/68‑1 (MQ=255) ggACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAAc > 2:594042/1‑68 (MQ=255) gcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAgg < 1:143242‑M2/101‑1 (MQ=255) gcctgtaggagcggatttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGaaa < 2:249110‑M2/114‑1 (MQ=255) ccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGaaa > 2:930305/1‑150 (MQ=255) tAGGAGCGGGTTTACCCGCGACGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGCACACGGACGCAAAGAGAACAATct < 2:483002/150‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAAct > 2:623467/1‑150 (MQ=255) gAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCtt < 1:883083/150‑1 (MQ=255) | GCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTT > NC_002947/4896365‑4896633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |