| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 200407 | 58 (0.870) | 19 (0.410) +AGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCAT |
11/184 | 3.8 | 27.3% | coding (5913/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | = 213076 | 88 (1.320) | coding (18582/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/200321‑200407‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACGGTGCCGTTGGCCGGCACGGTGATGACGGTTTTGCCGTC < NC_002947/213076‑213035 ||||||||||||||||||||||||||||||||||||||||| accGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACa > 1:285632/4‑149 cGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACAGT < 2:285632/149‑1 CCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACGGTGATGAC < 1:493776/150‑1 CTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACTGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACAGTGAT < 1:1314651/145‑1 CTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACTGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACAGTGAT > 2:1314651/1‑145 ACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCACCACGGTGCCATTAGCCGGCACGGTGATGAC > 1:265191/1‑140 ACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCACCACGGTGCCATTAGCCGGCACGGTGATGAC < 2:265191/140‑1 GAAGGCGGCGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACGGTGATGACGGTT < 1:1543640/141‑1 GAAGGCGGCGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACGGTGATGACGGTT > 2:1543640/1‑141 ACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACGGTGATGACGGTT > 2:606713/1‑122 ACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACGGTGATGACGGTT < 1:606713/122‑1 ACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGTTGGCCGGCACGGT > 2:35543/1‑110 ACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGTTGGCCGGCACGGT < 1:35543/110‑1 AACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGA > 1:141498/1‑40 AACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGA < 2:141498/40‑1 ACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTC < 1:798279/68‑1 ACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTC > 2:798279/1‑68 AAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGTTGGCCGGCACG < 1:334278/90‑1 AAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGTTGGCCGGCACG > 2:334278/1‑90 AAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACTGTGCCGTTGGCCGGCACag < 2:308133/90‑3 AAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACTGTGCCGTTGGCCGGCACag > 1:308133/1‑88 GATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGT > 2:135779/1‑51 GATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGT < 1:135779/51‑1 aatAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACGGTGATGACGGTTTTGCCGTC > 1:654870/4‑92 aatAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCGTTGGCCGGCACGGTGATGACGGTTTTGCCGTC < 2:654870/89‑1 CACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCG > 1:446247/1‑40 CACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCG < 2:446247/40‑1 ATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCA < 2:957004/38‑1 ATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCA > 1:957004/1‑38 TTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGTTGGCCGGCACGGTGATGACGGT < 2:183295/62‑1 TTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGTTGGCCGGCACGGTGATGACGGT > 1:183295/1‑62 ||||||||||||||||||||||||||||||||||||||||| ACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/200321‑200407‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACGGTGCCGTTGGCCGGCACGGTGATGACGGTTTTGCCGTC < NC_002947/213076‑213035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |