New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6013891	57 (0.830)	20 (0.370)	18/214	2.8	29.3%	intergenic (+40/+70)	xpt/PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
	?	NC_002947	= 6013919	51 (0.930)					intergenic (+68/+42)	xpt/PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein

TGGCGGGCCTGGGTATCGTGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6013718‑6013891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcacgcccgctcccacaggtACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTAACCCTGGCTGTCCAG  <  NC_002947/6013919‑6013771                                                                                                                                                                                                                                                                                                                                       TGGCGGGCCTGGGTATCGTGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTC                                                                                                                                                                                 >  2:144791/1‑150 TGGCGGGCCTGGGTATCGTGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTC                                                                                                                                                                                 <  1:823509/150‑1   GCGGGCCTGGGTATCGTGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGC                                                                                                                                                                               <  1:944225/150‑1     GGGCCTGGGTATCGTGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGG                                                                                                                                                                             <  2:50595/150‑1     GGGCCTGGGTATCGTGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGG                                                                                                                                                                             <  2:211988/150‑1       GCCTGGGTATCGTGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGC                                                                                                                                                                           >  1:249283/1‑150                 CGTGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTC                                                                                                                                                                 <  2:621233/150‑1                   TGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCC                                                                                                                                                               <  2:814210/150‑1                   TGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCC                                                                                                                                                               >  2:233069/1‑150                   TGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCAC                                                                                                                                                                         >  2:1630346/1‑140                   TGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCAC                                                                                                                                                                         <  1:1630346/140‑1                    GATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCGTGCCCGCgaagc                                                                                                                                                              <  2:745511/150‑6                     agCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCAC                                                                                                                                                             >  1:1633940/3‑150                     ATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCAC                                                                                                                                                             <  2:350109/150‑1                         AGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGT                                                                                                                                                         <  1:618177/150‑1                          GAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAG                                                                                                                                                           >  1:425594/1‑147                          GAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAG                                                                                                                                                           <  2:425594/147‑1                            AGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACG                                                                                                                                                      >  1:1436654/1‑150                               CGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCA                                                                                                                                                   >  1:1542437/1‑150                                 TTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGC‑GGCACGCCCGCTCCCACAGGTACGGCACAG                                                                                                                                                >  1:947101/1‑150                                            CCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGCGT‑TCGAGAC                                                                                                                                     <  2:374719/150‑1                                                        GGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACC                                                                                                                        <  2:1436654/150‑1                                                           gtGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGT                                                                                                                     <  2:1698051/148‑1                                                              CCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCAC                                                                                                                         >  1:552705/1‑143                                                              CCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCAC                                                                                                                         <  2:552705/143‑1                                                              CCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGC                                                                                                                           <  1:1122398/141‑1                                                              CCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGC                                                                                                                           >  2:1122398/1‑141                                                                                   GCTGGCCCGGGTTAAGTCGCTGTAAGGTGGTGTTGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGC‑GGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAG                                                                                            <  2:947101/150‑1                                                                                                  GTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGT                                                                                                                     <  1:215643/111‑1                                                                                                  GTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGT                                                                                                                     >  2:215643/1‑111                                                                                                   TCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGG                                                                                                             >  2:1620118/1‑118                                                                                                         GAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTG                                                                                                                    >  1:232486/1‑105                                                                                                         GAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTG                                                                                                                    <  2:232486/105‑1                                                                                                                           TTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGC                                                                                                                              >  2:254120/1‑77                                                                                                                           TTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGC                                                                                                                              <  1:252796/77‑1                                                                                                                           TTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGC                                                                                                                              >  2:252796/1‑77                                                                                                                           TTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGC                                                                                                                              <  1:254120/77‑1                                                                                                                                                         GGGCACGCCCGCTCCCACAGGTACGGCACAGCGG‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGCAGCAGGTGTCGCGTTTATTGGATGAAGCTGACCACACCACCTTCCAGAGACTTCCCCCGGGCCAGCGATTCAAC                       >  1:521651/1‑150                                                                                                                                                             ACGCCCGCTCCCACAGGTGCAGCACAG‑GTCTCGA‑ACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGG                   >  2:1542437/1‑150                                                                                                                                                               GCCCGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTA                 >  1:1171775/1‑150                                                                                                                                                                 CCGCTCCCACAGGTGCAGCACAGGTC‑TCGAACG‑CTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGA                                               >  1:1620118/1‑118                                                                                                                                                                 CCGCTCCCACAGGTACGGCACAGCGT‑AAAATAT‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTAAC               >  1:896614/1‑150                                                                                                                                                                  CGCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTAACC              <  2:1057499/150‑1                                                                                                                                                                   GCTCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTAACCC             >  2:841716/1‑150                                                                                                                                                                     TCCCACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTAACCCTG           <  1:1065881/150‑1                                                                                                                                                                         ACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGA                                                                  <  1:1525106/91‑1                                                                                                                                                                         ACAGGTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGA                                                                  >  2:1525106/1‑91                                                                                                                                                                           AGGTGCGGCAAAGCGT‑GCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTCACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTAACCCTGGCTGTC     <  2:682787/150‑1                                                                                                                                                                             GTACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTAACCCTGGCTGTCCA   <  1:1421636/150‑1                                                                                                                                                                              TACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTAACCCTGGCTGTCCAG  >  2:249283/1‑150                                                                                                                                                                                                                                                                                                                                       TGGCGGGCCTGGGTATCGTGATCGAGAAGTCGTTCCAGGGCGGCCGTGCCGAACTGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6013718‑6013891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcacgcccgctcccacaggtACGGCACAGCGT‑TCGAGAC‑CTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGTGTCGCGTTTATTCGATGAAGCTGACCACACCACCTTCCAGCGACTTCACCCGGGCCAGCGATTCAACGCGGTAACCCTGGCTGTCCAG  <  NC_002947/6013919‑6013771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.