Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,443,925	G→T	P90T (CCG→ACG)	PP_1262 ←	LysR family transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,443,925	0	G	T	100.0%	232.2 / NA	72	P90T (CCG→ACG)	PP_1262	LysR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (41/31);  total (41/31)

CCCTCGTCGAGCAGATCGGGCACGCGGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGGGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGCAGATG  >  NC_002947/1443780‑1444066                                                                                                                                                  |                                                                                                                                              cccTCGTCGAGCAGATCGGGCACGCGGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGATCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTgcgc                                                                                                                                           <  2:1564815/150‑1 (MQ=255)  ccTCGTCGAGCAGATCGGGCACGCGGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGATGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTgcgcg                                                                                                                                          >  1:1425746/1‑150 (MQ=255)         gAGCAGATCGGGCACGCGGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGAATGGGc                                                                                                                                   >  2:956723/1‑150 (MQ=255)              ggtCGGGCACGCGGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGc                                                                                                                              >  2:936581/3‑150 (MQ=255)                     cACGCGGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTc                                                                                                                       <  1:399671/150‑1 (MQ=255)                      aCGCGGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCg                                                                                                                      <  1:887353/150‑1 (MQ=255)                      aCGCGGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCg                                                                                                                      >  2:1702527/1‑150 (MQ=255)                        gcgGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGc                                                                                                                    >  2:1432996/1‑150 (MQ=255)                          ggTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCt                                                                                                                  >  2:1277043/1‑150 (MQ=255)                            ttGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCg                                                                                                                >  2:102616/1‑150 (MQ=255)                             tGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCgg                                                                                                               <  2:1399633/150‑1 (MQ=255)                               gCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACTACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGAATGGGCGTCGCTGGCTTCGGAATCggtt                                                                                                             >  1:781201/1‑148 (MQ=255)                               gCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATgg                                                                                                                                     <  1:744354/126‑1 (MQ=255)                               gCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATgg                                                                                                                                     >  2:744354/1‑126 (MQ=255)                                ccATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGTCCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTc                                                                                                                       <  1:293417/139‑1 (MQ=255)                                ccATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTc                                                                                                                       >  2:293417/1‑139 (MQ=255)                                ccATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGctt                                                                                                            >  2:1059530/1‑150 (MQ=255)                                 cATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATgg                                                                                                                                     <  2:1536862/124‑1 (MQ=255)                                 cATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATgg                                                                                                                                     >  1:1536862/1‑124 (MQ=255)                                 cATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGcttc                                                                                                           <  2:260100/150‑1 (MQ=255)                                 cATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGcttc                                                                                                           >  1:1534003/1‑150 (MQ=255)                                   tGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGcttctt                                                                                                         <  2:1056998/150‑1 (MQ=255)                                    ggTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCttcttc                                                                                                        <  2:197053/150‑1 (MQ=255)                                     gTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCg                                                                                                       >  2:1101716/1‑150 (MQ=255)                                       cAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCCAc                                                                                                     <  1:1702527/150‑1 (MQ=255)                                        aaaTCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCg                                                                                                                      <  2:673307/132‑1 (MQ=255)                                        aaaTCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCg                                                                                                                      >  1:673307/1‑132 (MQ=255)                                        aaaTCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACg                                                                                                    >  2:204277/1‑150 (MQ=255)                                             gAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGt                                                                                               >  2:1122840/1‑150 (MQ=255)                                                       tCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGt                                                                                     <  2:1238402/150‑1 (MQ=255)                                                        ccGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGAATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGtt                                                                                    <  1:956723/150‑1 (MQ=255)                                                            gTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCa                                                                                >  1:384019/1‑150 (MQ=255)                                                              gCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAAc                                                                              <  1:936581/150‑1 (MQ=255)                                                                        ttcgtgggCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTa                                                                    >  1:1248089/6‑150 (MQ=255)                                                                             gggCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCt                                                               >  1:231251/1‑150 (MQ=255)                                                                                cGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGc                                                            <  2:231251/150‑1 (MQ=255)                                                                                      cATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGGGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCtt                                                      >  1:464959/1‑150 (MQ=255)                                                                                      cATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCtt                                                      >  2:12191/1‑150 (MQ=255)                                                                                       aTCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATc                                                                         <  1:1479570/130‑1 (MQ=255)                                                                                       aTCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATc                                                                         >  2:1479570/1‑130 (MQ=255)                                                                                          gACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGt                                                  >  1:764216/1‑150 (MQ=255)                                                                                            ccACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCa                                                >  1:268414/1‑150 (MQ=255)                                                                                            ccACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCa                                                <  1:1054852/150‑1 (MQ=255)                                                                                             cACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTGACGCTTGCCGGCTTCGGTCAg                                               >  2:875656/1‑150 (MQ=255)                                                                                             cACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAg                                               >  1:1313957/1‑150 (MQ=255)                                                                                              aCGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAgc                                              <  2:268414/150‑1 (MQ=255)                                                                                                gAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAgcgc                                            >  2:1662983/1‑150 (MQ=255)                                                                                                    tGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATg                                        >  2:1404266/1‑150 (MQ=255)                                                                                                    tGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATg                                        >  1:191708/1‑150 (MQ=255)                                                                                                     gCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATgc                                       <  1:102616/150‑1 (MQ=255)                                                                                                         gCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATgg                                                                                                                                     >  2:230494/1‑52 (MQ=255)                                                                                                         gCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATgg                                                                                                                                     <  1:230494/52‑1 (MQ=255)                                                                                                              ccccAGTCATCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGggtgg                              >  2:1604870/1‑150 (MQ=255)                                                                                                                       tCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGa                     >  1:1404424/1‑150 (MQ=255)                                                                                                                       tCGAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGa                     >  1:37747/1‑150 (MQ=255)                                                                                                                         gAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGagc                   <  1:266316/150‑1 (MQ=255)                                                                                                                         gAATGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGagc                   <  2:1248089/150‑1 (MQ=255)                                                                                                                          aaTGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGagca                  <  2:384019/150‑1 (MQ=255)                                                                                                                            tGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGagcagc                >  2:541260/1‑150 (MQ=255)                                                                                                                            tGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGagcagc                <  2:1313957/150‑1 (MQ=255)                                                                                                                            tGCACCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGagcagc                <  1:1432996/150‑1 (MQ=255)                                                                                                                               aCCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAgc                                              <  1:1486003/117‑1 (MQ=255)                                                                                                                               aCCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAgc                                              >  2:1486003/1‑117 (MQ=255)                                                                                                                               aCCTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCCGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCtt             >  2:225263/1‑150 (MQ=255)                                                                                                                                 cTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGcttc                                                                                                           <  2:1365520/54‑1 (MQ=255)                                                                                                                                 cTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGcttc                                                                                                           >  1:1365520/1‑54 (MQ=255)                                                                                                                                 cTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGt           >  2:1116610/1‑150 (MQ=255)                                                                                                                                 cTTCAACTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGt           >  1:1456905/1‑150 (MQ=255)                                                                                                                                     aaCTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGc       <  1:875656/150‑1 (MQ=255)                                                                                                                                      aCTGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGCa      >  1:1417023/1‑150 (MQ=255)                                                                                                                                        tGCCCGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGCAGa    <  2:1425746/150‑1 (MQ=255)                                                                                                                                          cccGGCCGTGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGCAGATg  <  1:541260/150‑1 (MQ=255)                                                                                                                                             ggccgtGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACgg                         >  1:1352340/1‑124 (MQ=255)                                                                                                                                             ggccgtGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACgg                         <  2:1352340/124‑1 (MQ=255)                                                                                                                                             ggccgtGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACgg                         >  1:1352648/1‑124 (MQ=255)                                                                                                                                             ggccgtGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACgg                         <  2:1352648/124‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              CCCTCGTCGAGCAGATCGGGCACGCGGTTGGCCATGGTCAAATCGAAGGTCACGTCCGGGTGCGTTTCGCGGTAGCGGGCGATGGCATCGACCACGAAGTGCTGGCCGACCCCAGTCATCGAATGCACCTTCAACTGCCCGGCCGGGCGCGCATGGGCGTCGCTGGCTTCGGCCTCGGCTTCTTCGACGTAGGTAAGAATCTGTTCGCAACGCATCAGGTAACGCTTGCCGGCTTCGGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGCAGATG  >  NC_002947/1443780‑1444066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑