| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,762,580:1 | +G | 23.5% | coding (1885/2091 nt) | PP_3325 → | ferric siderophore receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,762,580 | 1 | . | G | 23.5% | 32.4 / 13.5 | 17 | coding (1885/2091 nt) | PP_3325 | ferric siderophore receptor |
| Reads supporting (aligned to +/- strand): ref base . (6/7); new base G (2/2); total (8/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.22e-01 | |||||||||||
ACCAAAGGCGACGCAGCCCTGCCCAAAGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCACCCTGGACGCCTACAGCACGGTCGACCTGCTGGCGCACTACAAGGCCAGCGAACAGGTCACCGTCGGCCTTAACCTCAACAACCTGTTCGACCGCAAGTACTA > NC_002947/3762433‑3762707 | aCCAAAGGCGACGCAGCCCTGCCCAAAGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑cc > 1:212206/1‑150 (MQ=255) gACGCAGCCCTGCCCAAAGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCTGCCGGCCTGGc > 2:73660/1‑150 (MQ=255) gACGCAGCCCTGCCCAAAGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGcc > 2:430534/1‑150 (MQ=255) cTGCCCAAAGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGAc < 1:45263/150‑1 (MQ=255) cTGCCCAAAGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCCAc < 1:508575/150‑1 (MQ=255) tGCCCAAAGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCTGCCGGCCTGGCCggagcgttc < 1:73660/150‑8 (MQ=255) ccAAAGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCa > 1:229068/1‑150 (MQ=255) aaGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCAccc > 2:316799/1‑150 (MQ=255) ggCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCACCCTg < 1:430534/150‑1 (MQ=255) cccGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCACCCTGGACGCCTACAGCACGGTCGAcc > 1:351113/1‑150 (MQ=255) cGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCACCCTGGACGCCTACAGCACGGTCGACCTGCTGGCGCa < 2:190905/150‑1 (MQ=255) aTGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCTGCCGGCCTGGCCggagc > 1:306148/1‑93 (MQ=255) aTGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCTGCCGGCCTGGCCggagc < 2:306148/96‑4 (MQ=255) tgtgCGAAGTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGTGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCGCCCTGGACGCCTACAGCACGGTCGACCTGCTGGCGCACTACAAGGCCAGCGAAc < 1:455860/150‑1 (MQ=255) tgtACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCACCCTGGACGCCTACAGCACGGTCGACCTGCTGGCGCACTACa < 1:332475/138‑1 (MQ=255) tgtACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCACCCTGGACGCCTACAGCACGGTCGACCTGCTGGCGCACTACa > 2:332475/1‑138 (MQ=255) ccTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCACCCTGGACGCCTACAGCACGGTCGACCTGCTGGCGCACTACAAGGCCAGCGAACAGGTCACCGTCGGCCTTAACCt < 2:212206/150‑1 (MQ=255) ggTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCACCCTGGACGCCTACAGCACGGTCGACCTGCTGGCGCACTACAAGGCCAGCGAACAGGTCACCGTCGGCCTTAACCTCAACAACCTGTTCGACCGCAAGtacta > 1:284036/1‑150 (MQ=255) | ACCAAAGGCGACGCAGCCCTGCCCAAAGGCAGCGACTTGCTCGGCATCGCCCGTAACAGCGGCAGCCTGATGGGCGTGTACGAATTCCAGGACGGGGCCCTGCGCGGCTCGGATGTGGGCGCAGCGGTGAACTACGTCGGCGAACGCT‑CCGGCCAGGCCGGCAGCGACTTCACCCTGGACGCCTACAGCACGGTCGACCTGCTGGCGCACTACAAGGCCAGCGAACAGGTCACCGTCGGCCTTAACCTCAACAACCTGTTCGACCGCAAGTACTA > NC_002947/3762433‑3762707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |