| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,057,080:1 | +C | 18.2% | coding (995/2082 nt) | PP_0914 ← | GGDEF domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,057,080 | 1 | . | C | 18.2% | 57.7 / 11.3 | 22 | coding (995/2082 nt) | PP_0914 | GGDEF domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base . (9/9); new base C (2/2); total (11/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
GCGGATTTGCTCGTGGTCGAGGTCGAACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCGGCCAGGGCCAGCAGCAACTGGTCACCGACCTGGTAGCTGAATTGTTCGTTGATACCCTTGAAGTCGTCCAGGCCAACGCACAGCACTGCCACACGGTGCTGCAGGCGGCCGCCGTCG > NC_002947/1056938‑1057226 | gCGGATTTGCTCGTGGTCGAGGTCGAACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGcc > 2:210039/1‑150 (MQ=255) tGCTCGTGGTCGAGGTCGAACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTgg < 2:481833/150‑1 (MQ=255) cTCGTGGTCGAGGTCGAACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGgc < 2:377472/150‑1 (MQ=255) tCGTGGTCGAGGTCGAACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCa < 2:308693/133‑1 (MQ=255) tCGTGGTCGAGGTCGAACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCa > 1:308693/1‑133 (MQ=255) cGTGGTCGAGGTCGAACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGgcgc < 2:56507/150‑1 (MQ=255) ggtcgaggtcgaACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTa < 1:433856/150‑1 (MQ=255) gaggtcgaACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCg > 2:455833/1‑150 (MQ=255) gaACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAg > 1:152303/1‑141 (MQ=255) gaACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAg < 2:152303/141‑1 (MQ=255) aCGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCggcca > 1:152579/1‑150 (MQ=255) gtcAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCACAGCGGCCGcc < 1:135617/112‑2 (MQ=255) gtcAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCACAGCGGCCGcc > 2:135617/1‑111 (MQ=255) gtcAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCACAGCGGCCGcc < 1:135556/112‑2 (MQ=255) gtcAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCAAGCCGCGCCAGAGCGCCCACAGCGGCCGcc > 2:135556/1‑111 (MQ=255) gAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCGGCCAGGGCCAGCAGCAACTGGTCAc > 1:235522/1‑150 (MQ=255) cgcCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCGGCCAGGGCCAGCAGCAACTgg < 2:229195/136‑1 (MQ=255) cgcCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCGGCCAGGGCCAGCAGCAACTgg > 1:229195/1‑136 (MQ=255) gcCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGTCGCtgt < 2:19491/97‑1 (MQ=255) gcCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCtgt > 1:19491/1‑97 (MQ=255) gCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCGGCCAGGGCCAGCAGCAACTGGTGACAGACCTGCTAGCTGAGTTGt > 2:38512/1‑150 (MQ=255) ctCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCGGCCAGGGCCAGCAGCAACTGGTCACCGACCTGGTAGCTGAATTGTTCGTTGATACCCTTGaa < 1:210039/150‑1 (MQ=255) gCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCGGCCAGGGCCAGCAGCAACTGGTCACCGACCTGGTAGCTGAATTGTTCGTTGATACCCTTGAAGTCGTCCAgg < 1:455833/150‑1 (MQ=255) cccA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCGGCCAGGGCCAGCAGCAACTGGTCACCGACCTGGTAGCTGAATTGTTCGTTGATACCCTTGAAGTCGTCCAGGCCAACGCACAGCACTGCCACACGGTGCTGCATGCGGACGCCGTcg > 1:153081/1‑150 (MQ=255) | GCGGATTTGCTCGTGGTCGAGGTCGAACGGTACTTCCAGGTCGTCAAGAATGCTTTGCGCCAGTTCGGCAGCCTCATAGGGCTGCTCGATATTGGCCTGTACCAGGGCGAACTGGTCGCCGCCCAGCCGCGCCAGAGCGCCCA‑GGCGGCCGCTGTGGGCGCGTAGTCGATCGGCCAGGGCCAGCAGCAACTGGTCACCGACCTGGTAGCTGAATTGTTCGTTGATACCCTTGAAGTCGTCCAGGCCAACGCACAGCACTGCCACACGGTGCTGCAGGCGGCCGCCGTCG > NC_002947/1056938‑1057226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |