New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5196440	27 (1.440)	4 (0.230)	3/226	NT	14.3%	coding (123/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	= 5196465	23 (1.330)					coding (98/690 nt)	ybgJ	allophanate hydrolase subunit 1

CACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5196285‑5196440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgctcgccgCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGGCGCCAGGCGAGGCCAGGGCGCGAATCGCTCAGGCGCTGGACGGCTTGCAGCCTGACACAG  <  NC_002947/5196465‑5196319                                                                                                                                                                                                                                                                                                                 CACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGC                                                                                                                                                           >  1:388273/1‑150                                      TGTTAGGCTGCAAGCCGTCCAGCGCCTGAGCGACTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCCTATTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGA                                                                                                                      <  2:198563/150‑1                                                CAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTTGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCCGCGAGCATTTGCTG                                                                                                            <  1:17513/150‑1                                                   GCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGC                                                                                                                                                       >  1:168868/1‑104                                                   GCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGC                                                                                                                                                       <  2:168868/104‑1                                                                  AGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGA                                                                                                                      >  2:190456/1‑122                                                                  AGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATAAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGA                                                                                                                      <  1:190456/122‑1                                                                                                                                                          CCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGGCGCCAGGCGAGGCCAGGGCGCGAATCGCTCAGGCGCTGGACGGCTTGCAGCCTGACACAG  >  2:405173/1‑150                                                                                                                                                                                                                                                                                                                 CACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5196285‑5196440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgctcgccgCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGGCGCCAGGCGAGGCCAGGGCGCGAATCGCTCAGGCGCTGGACGGCTTGCAGCCTGACACAG  <  NC_002947/5196465‑5196319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.