New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5816927 | 27 (1.440) | 4 (0.250) | 4/210 | NT | 14.0% | intergenic (+57/+72) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
? | NC_002947 | = 5816954 | 26 (1.620) | intergenic (+84/+45) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
AGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5816764‑5816927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacaggtaTGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGTACCGGATAGCGCCGATCAGCTTAACGCTTGGCCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCA < NC_002947/5816954‑5816815 AGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCC < 2:31906/150‑1 GGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAGTTGCGGCAGCTGAGTCTGGCCAAGCGTTGAGCTTATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGGCCGCCCGC > 1:241553/1‑150 GAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCGTGCCCGCgaag < 1:476266/150‑5 TGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGG < 2:241553/150‑1 GGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGA < 1:467716/150‑1 AGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGG > 1:21417/1‑119 AGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGG < 2:21417/119‑1 TCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGTACCGGATAGCGCCGATCAGCTTAACGCTTGGCCAGA < 1:175456/111‑1 TCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGTACCGGATAGCGCCGATCAGCTTAACGCTTGGCCAGA > 2:175456/1‑111 CCCACGGGTATGGGAGCGGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGTACCGGATAGCGCCGATCAGCTTAACGCTTGGCCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCA < 1:185349/150‑1 AGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5816764‑5816927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacaggtaTGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGTACCGGATAGCGCCGATCAGCTTAACGCTTGGCCAGACTCAGCTGCTGCTCTTTCGGCAGCACCCGCTTGGCCACCA < NC_002947/5816954‑5816815 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |