New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	478264 =	21 (1.120)	7 (0.490)	6/186	NT	34.3%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478359 =	11 (0.780)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase

TTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGC  >  NC_002947/478124‑478398                                                                                                                                              |                                                                                                                                       ttGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTc                                                                                                                               >  2:71532/1‑150 (MQ=255)     tGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCgg                                                                                                                           <  1:184666/150‑1 (MQ=255)     tGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCgg                                                                                                                           <  1:19037/150‑1 (MQ=255)     tGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCgg                                                                                                                           <  2:255001/150‑1 (MQ=255)          cccGACCTGGTGCATCCGGGTGTGGGCAAGTACATGGCGGATGGTG‑GGGAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTaaa                                                                                                                      <  1:240772/150‑1 (MQ=255)              cagcggcggcgcgagcggtggatgtgaagccgttggtgcaagccgggctgaccggtcaggcactgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctacCGGCCTCTTCGCgg                                                                                                                           >  1:273204‑M1/129‑142 (MQ=255)              cagcggcggcgcgagcggtggatgtgaagccgttggtgcaagccgggctgaccggtcaggcactgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcacggttagacctacCGGCCTCTTCGCgg                                                                                                                           <  2:273204‑M1/14‑1 (MQ=255)              aCCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCg                                                                                                                  <  1:71532/150‑1 (MQ=255)                        tCCGGGTGTGGGCAAGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTacgac                                                                                                        >  2:301576/1‑150 (MQ=255)                                   gCAAGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGccc                                                                                             >  2:21692/1‑150 (MQ=255)                                      aGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAAc                                                                                          <  2:179984/150‑1 (MQ=255)                                                 gtgcaagccgggctgaccggtcaggcactgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctacCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                                              >  2:397486‑M1/94‑120 (MQ=255)                                                 gtgcaagccgggctgaccggtcaggcactgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctacCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                                              <  1:397486‑M1/27‑1 (MQ=255)                                                       gtgGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTcgc                                                                                                                             <  2:174821/99‑1 (MQ=255)                                                       gtgGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTcgc                                                                                                                             >  1:174821/1‑99 (MQ=255)                                                                 gcgcAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGc                                                                <  1:301576/150‑1 (MQ=255)                                                                   ggtcaggcactgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctacCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCGACCTCTGATGTGTGCCCCCTGTAGGAGCgg                                                              <  2:344589‑M1/75‑1 (MQ=255)                                                                    gtcaggcactgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctacCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCGACCTCTGATGTGTGCCCCCTGTAGGAGCggg                                                             >  1:344589‑M1/75‑150 (MQ=255)                                                                         gcactgggcgtagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctacCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTAc                                                        >  2:410383‑M1/70‑150 (MQ=255)                                                                           actgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctacCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCgg                                                              <  1:480634‑M1/75‑1 (MQ=255)                                                                           actgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctacCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCgg                                                              >  2:480634‑M1/68‑142 (MQ=255)                                                                            ctgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctatCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCgg                                                              <  2:64658‑M1/75‑1 (MQ=255)                                                                            ctgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagacctatCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCgg                                                              >  1:64658‑M1/67‑141 (MQ=255)                                                                               ggTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGGCTGAGCCCGACCTCTGATGTGTGCCCCCTGTGGGAGCGGGCTTACCcgcgg                                                  >  1:227270/1‑149 (MQ=255)                                                                                     gtcccccGTGGCCTTTGGCTGGCTCGGTTTGAAGTGGCCGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCTCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGc                                            <  2:227270/148‑1 (MQ=37)                                                                                          ccGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACct                                                                                        >  2:461587/1‑101 (MQ=255)                                                                                          ccGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACct                                                                                        <  1:461587/101‑1 (MQ=255)                                                                                                  tttGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAAc                               <  1:259408/150‑1 (MQ=255)                                                                                                  tttGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAAc                               >  2:178303/1‑150 (MQ=255)                                                                                                                       ttGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGCGAACCGCGCTCCGACGACGGGCTGAAAGCAAGCTCTGATGGGTGAGCGCTGTGGGAGCGGGTTTACTCGCGATGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAgcg          >  2:397967/1‑150 (MQ=255)                                                                                                                         gACGCCCGCTGGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCt        <  1:21692/150‑1 (MQ=255)                                                                                                                               cGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGc  <  1:178303/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                       TTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCA‑GCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGC  >  NC_002947/478124‑478398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.