New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1780109 =	12 (0.640)	4 (0.250)	4/208	NT	25.7%	intergenic (+26/+80)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780171 =	13 (0.820)					intergenic (+88/+18)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase

CGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGT  >  NC_002947/1779968‑1780249                                                                                                                                              |                                                                                                                                             cgcAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTc                                                                                                                                      <  2:280224/150‑1 (MQ=255)          gaagtggatggggtgaacccgggtgccgggcgcgtgcgcatggcactggttgcaccgctggccgaatgcatcgaagcggcggagcgcattcgctccttcctgcaaaaccgctgatcaaccccttcgcgggcaCGCCCGCTCCCACAGGTa                                                                                                                             >  2:9562‑M1/133‑150 (MQ=255)                   ggggtgaacccgggtgccgggcgcgtgcgcatggcactggttgcaccgctggccgaatgcatcgaagcggcggagcgcattcgcgccttcctgcaaaaccgctgatcaaccccttcgcgggcaCGCCCGCTcc                                                                                                                                     >  2:280294‑M1/124‑133 (MQ=255)                   ggggtgaacccgggtgccgggcgcgtgcgcatggcactggttgcaccgctggccgaatgcatcgaagcggcggagcgcattcgcgccttcctgcaaaaccgctgatcaaccccttcgcgggcaCGCCCGCTcc                                                                                                                                     <  1:280294‑M1/10‑1 (MQ=255)                    cAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGACCGGCTGGGTTCAGTCAAGTAGACCCTATAAAGCACCTTTGTGGTCGCGCCCGCTCCCACAGGTAatgcgctgcg                                                                                                                   >  1:240889/1‑150 (MQ=255)                                             ggggATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCTCTTCGCGGGCGCTCCCGCTCCCACATGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTgg                                                                                          <  2:186291/150‑1 (MQ=255)                                                   gAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGAgg                                                                                    <  2:240889/150‑1 (MQ=255)                                                      gtggtgCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACGTGTGGGAGCGGGCg                                                                                 >  1:310065/1‑150 (MQ=255)                                                                   ctggccgaatgcatcgaagcggcggagcgcattcgcgccttcctgcaaaaccgctgatcaaccccttcgcgggcaCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTgg                                                                                          >  2:184509‑M1/76‑128 (MQ=255)                                                                   ctggccgaatgcatcgaagcggcggagcgcattcgcgccttcctgcaaaaccgctgatcaaccccttcgcgggcaCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTgg                                                                                          <  1:184509‑M1/53‑1 (MQ=255)                                                                         gTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGAt                                                              >  2:209497/1‑150 (MQ=255)                                                                                         tgagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGa                                              >  2:124129/1‑150 (MQ=255)                                                                                             gCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGgc                                          >  1:78051/1‑150 (MQ=255)                                                                                                        ttCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTActgc                                                                                                                         <  2:152924/60‑1 (MQ=255)                                                                                                        ttCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTActgc                                                                                                                         >  1:152924/1‑60 (MQ=255)                                                                                                               gcaaaaccgctgatcaaccccttcgcgggcaCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCtgt                                                                                            >  2:211325‑M1/32‑82 (MQ=255)                                                                                                               gcaaaaccgctgatcaaccccttcgcgggcaCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCtgt                                                                                            <  1:211325‑M1/51‑1 (MQ=255)                                                                                                                       ccTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGc                >  1:497224/1‑150 (MQ=255)                                                                                                                                  ccTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGc     <  2:78051/150‑1 (MQ=255)                                                                                                                                     ccggggggGCGCCCGCTCCCATAGGTACGGCGCGGCGCTTGAAATCAGCGCTGTACGTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGt  <  2:497224/146‑1 (MQ=38)                                                                                                                                              |                                                                                                                                             CGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGT  >  NC_002947/1779968‑1780249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.