New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5671689	16 (0.850)	3 (0.200)	3/198	NT	17.2%	intergenic (+57/‑113)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	= 5671726	16 (1.060)					intergenic (+94/‑76)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein

CGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCC  >  NC_002947/5671540‑5671832                                                                                                                                                      |                                                                                                                                                cGTCAGTGCCTGCGCCATCCGGGGCTACGTCTATCGCTGGGCAAGCGGCGCAAGGATATCTAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                 <  1:28992‑M1/150‑1 (MQ=255)   tCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                 <  1:193794‑M1/148‑1 (MQ=255)   tCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                 >  2:193794‑M1/1‑148 (MQ=255)           tGCGCCATCCGGGGCTACGACTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGATCGGGCGTGCCCGCGAAGACAGCAAcc                                                                                                                                       >  2:203941/1‑150 (MQ=255)                    cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCgagc                                                                                                                              <  1:17649/150‑4 (MQ=255)                    cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTg                                                                                                                              >  2:451348/1‑150 (MQ=255)                                     cTGGGCGAGGGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGgt                                                                                                             <  1:153305/150‑1 (MQ=255)                                             gcggcgCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAcaccggcgaagccggtgccaacgatcgggttgctctcttcgcgg                                                                                                     <  1:479021‑M1/150‑45 (MQ=255)                                                  gcAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacg                                                                                                <  2:193237‑M2/150‑13 (MQ=255)                                                          atCGAGGCGCATCTGCTGCCATCCACCCAAGCCTGATGTGCCCGCAAAATTTATTGTCTTGCGCGGTCGTGTGGGAGCGGGCGTGCCCGCGAAGCGAATCATCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcc                                                                                        >  1:474002‑M2/1‑130 (MQ=255)                                                              aGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAcaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcc                                                                                              <  1:266615‑M1/140‑52 (MQ=255)                                                              aGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAcaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcc                                                                                              >  2:266615‑M1/1‑89 (MQ=255)                                                                        gctgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGgt                                                                                                             >  1:433361/1‑115 (MQ=255)                                                                        gctgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGgt                                                                                                             <  2:433361/115‑1 (MQ=255)                                                                               tCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCtt                                                                   >  2:468675/1‑150 (MQ=255)                                                                                         ccTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTacac                                                         >  2:359157/1‑150 (MQ=255)                                                                                                   ccGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgcg                                               >  1:255921/1‑150 (MQ=255)                                                                                                      cAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTgg                                                                                                                             >  1:431120/1‑69 (MQ=255)                                                                                                      cAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTgg                                                                                                                             <  2:431120/69‑1 (MQ=255)                                                                                                                  tCTTTCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCa                                >  1:132912/1‑150 (MQ=255)                                                                                                                        gcgGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCAGGCcac                          >  2:115298/1‑150 (MQ=255)                                                                                                                                 tgGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGgt                                                                                                             >  2:476060/1‑58 (MQ=255)                                                                                                                                 tgGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGgt                                                                                                             <  1:476060/58‑1 (MQ=255)                                                                                                                                 tgGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGccc                 <  2:25678/150‑1 (MQ=255)                                                                                                                                   ggAGCGGGCGTGCCCGCGAAcaccggcgaagccggtgccaacgatcggatgattcgcttcgcgggcacgcccgctcccacacgaccgcgcaagacaataaattttgcgggcacatcaggcttgggtggatggcagcagatgcgcctcgat               >  1:474002‑M1/1‑20 (MQ=255)                                                                                                                                         ggCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcct                   >  2:266615‑M2/1‑51 (MQ=255)                                                                                                                                         ggCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcct                   <  1:266615‑M2/140‑90 (MQ=255)                                                                                                                                           cGTGCCCGCGAAcaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatccttgc       <  2:193237‑M1/150‑139 (MQ=255)                                                                                                                                                ccGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatccttgcgccgc  <  1:479021‑M2/150‑107 (MQ=255)                                                                                                                                                      |                                                                                                                                                CGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCC  >  NC_002947/5671540‑5671832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.