New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5897799 =	14 (0.750)	4 (0.270)	5/192	NT	32.1%	intergenic (‑143/+91)	PP_5172/PP_5173	hypothetical protein/RND family transporter
	?	NC_002947	5897875 =	6 (0.410)					intergenic (‑219/+15)	PP_5172/PP_5173	hypothetical protein/RND family transporter

ACTCATGCTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCAC  >  NC_002947/5897651‑5897931                                                                                                                                                     |                                                                                                                                     aCTCATGCTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTCTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCctct                                                                                                                                     >  2:369498/1‑150 (MQ=255)  gaggtgttctggggccccatggcctacgccatgattggcgggatcatcgtggcgaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTg                                                                                                                                    >  1:450007‑M1/148‑150 (MQ=255)     gtgttctggggccccatggcctacgccatgattggcgggatcatcgtggcgaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTa                                                                                                                                 >  2:263593‑M1/145‑150 (MQ=255)            ggggccccatggcctacgccatgattggcgggatcatcgtggcgaccttgctgacgctgctgttcctgccggcgctttacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCgg                                                                                                                          >  2:247568‑M1/138‑150 (MQ=255)              ctcCTTGGAGGGAGGGCTCCGGGGTGAGGTGTGAAGGGGTTGTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGt                                                                                                                        <  2:190901/150‑1 (MQ=255)                      aGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCcgc                                                                                                                <  1:313705/150‑1 (MQ=255)                          tacgccatgattggcgggatcatcgtggcgaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAAt                                                                                                            <  1:243778‑M1/27‑1 (MQ=255)                               gcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGATTACTCGCGAATACgga                                                                                                       >  1:56546/1‑149 (MQ=255)                                 cGGGCAGAGGTATGAAGGTATTTGGCGCCTGGCTTGAGGGCAATAGTAGTGCGGCTGCAATATGCCGATTATGACTTTTGAAGAATTTTGAGATAACAATTTAAGCGACAACCAACCTGTTAGTAGCGGGTTTACCCGCGAATACggtgg                                                                                                     <  1:369498/150‑1 (MQ=255)                                               aaGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCATCATCg                                                                                       >  2:320669/1‑150 (MQ=255)                                                   tggcgaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCAtt                                                                                   >  2:135636‑M1/99‑150 (MQ=255)                                                       gaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTAc                                                                                                                    >  1:444740‑M1/95‑113 (MQ=255)                                                       gaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTAc                                                                                                                    <  2:444740‑M1/19‑1 (MQ=255)                                                          cttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg                                                                              >  2:364058‑M1/92‑148 (MQ=255)                                                           gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAACGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTa                                                                           >  2:313542/1‑150 (MQ=255)                                                                  ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGc                                                                    <  1:313542/150‑1 (MQ=255)                                                                             agtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg                                                         <  2:480667/150‑1 (MQ=255)                                                                                      gagggATTATCCATAAAAAAAATGTTAAAGAATTTTTATATAACCAGTTAAGAGAACACGCCTCTGGTAGGAGCGTGTTGACGCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATgg                                                <  2:56546/148‑1 (MQ=37)                                                                                              attCTTAAAAATACTCTTTAATAATTTTTATATACCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGTGCCTTCAg                                        <  1:199958/150‑1 (MQ=255)                                                                                                  tggtacaaggtccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg                                                                               >  2:232887‑M1/52‑107 (MQ=255)                                                                                                  tggtacaaggtccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg                                                                               <  1:232887‑M1/56‑1 (MQ=255)                                                                                                            tGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCgg                          <  2:426795/150‑1 (MQ=255)                                                                                                                               aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg       >  2:315213/1‑150 (MQ=255)                                                                                                                               aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg       <  1:315213/150‑1 (MQ=255)                                                                                                                                    tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCAc  >  2:45667/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                     ACTCATGCTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCAC  >  NC_002947/5897651‑5897931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.