New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 661596	26 (1.380)	3 (0.170)	3/236	NT	9.4%	intergenic (+103/+24)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein
	?	NC_002947	= 661622	33 (1.830)					coding (1336/1338 nt)	PP_0569	MATE efflux family protein

GGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCAGCGCAAT  >  NC_002947/661475‑661763                                                                                                                                                    |                                                                                                                                              ggACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgc                                                                                                                                             >  1:458424‑M2/1‑148 (MQ=255)   aCTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcga                                                                                                                                           >  1:103598‑M2/1‑146 (MQ=255)        gtATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGAcacca                                                                                                                                      <  1:250875/150‑1 (MQ=255)                            gggCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTctgct                                                                                                                        >  2:248840/1‑144 (MQ=255)                            gggCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTctgct                                                                                                                        <  1:248840/144‑1 (MQ=255)                                ttCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCa                                                                                                              >  2:102325/1‑150 (MQ=255)                                ttCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGAGACAGCGAAAGCAGGCCGACCCGCTATCCCTTGTGGGAGCGGACTTGCGGGCCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCa                                                                                                              >  1:369019/1‑150 (MQ=255)                                           ttCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTTCCCCATGTGGGAGCGGCCTTGCCTCGCGATCGGGCGCAATGGGGGAATATGCTTTCTCACCACTGGTCTCTCTGCTGCAACCGCCACCCAacccacc                                                                                                   <  1:392081/150‑1 (MQ=255)                                           ttCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAacccacc                                                                                                   <  2:464516/150‑1 (MQ=255)                                                    caAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCa                                                                                          <  1:102325/150‑1 (MQ=255)                                                     aaGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcga                                                                                                                                           <  1:150624‑M2/100‑5 (MQ=255)                                                     aaGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcga                                                                                                                                           >  2:150624‑M2/1‑96 (MQ=255)                                                               ccACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCa                                                                                          <  2:46548/139‑1 (MQ=255)                                                               ccACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCa                                                                                          >  1:46548/1‑139 (MQ=255)                                                                 acaGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAAccc                                                                             >  1:33764/1‑150 (MQ=255)                                                                  caGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAAcccc                                                                            >  1:409257/1‑150 (MQ=255)                                                                         cgcgAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAAcc                                                                     >  2:12683/1‑150 (MQ=255)                                                                          gcgAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAAccc                                                                    >  1:91514/1‑150 (MQ=255)                                                                                gCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGaaa                                                              <  1:87089/150‑1 (MQ=255)                                                                                    gCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGcc                                                          >  1:327425/1‑150 (MQ=255)                                                                                    gCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGcc                                                          >  2:3309/1‑150 (MQ=255)                                                                                         cccGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATc                                                       <  1:303710/148‑1 (MQ=255)                                                                                         cccGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATc                                                       >  2:303710/1‑148 (MQ=255)                                                                                                             cGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAAcc                                 >  2:448704/1‑150 (MQ=255)                                                                                                              ggCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCa                                                                                          >  1:389246/1‑92 (MQ=255)                                                                                                              ggCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCa                                                                                          <  2:389246/92‑1 (MQ=255)                                                                                                               gCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCg                               >  1:325918/1‑150 (MQ=255)                                                                                                                 cTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacgcaaggccgctcccacatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggc                                                       <  1:331063‑M2/124‑89 (MQ=255)                                                                                                                 cTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacgcaaggccgctcccacatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggc                                                       >  2:331063‑M2/1‑36 (MQ=255)                                                                                                                  ttGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacgcaaggccgctcccacatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatac                            <  1:287778‑M2/150‑116 (MQ=255)                                                                                                                  ttGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTc                            <  1:448704/150‑1 (MQ=255)                                                                                                                        cgcgATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATgg                                           <  1:231413/129‑1 (MQ=255)                                                                                                                        cgcgATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATgg                                           >  2:231413/1‑129 (MQ=255)                                                                                                                          cgATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCAc                    <  2:409257/150‑1 (MQ=255)                                                                                                                           gATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACt                   <  2:369019/150‑1 (MQ=255)                                                                                                                                 ccGCAAAGCGGCCCCAATCAGCGACACAGCAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCCCTGCCAcc             >  1:395745/1‑150 (MQ=255)                                                                                                                                  cGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGtt                                         <  1:181433/121‑1 (MQ=255)                                                                                                                                  cGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGtt                                         >  2:181433/1‑121 (MQ=255)                                                                                                                                     aaaGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCa         <  2:325918/150‑1 (MQ=255)                                                                                                                                           gCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCAGCGCaa   <  2:33764/150‑1 (MQ=255)                                                                                                                                            ccccAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCAGCGCAAt  <  1:12683/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                              GGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCAGCGCAAT  >  NC_002947/661475‑661763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.