New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 743469 | 16 (0.850) | 2 (0.120) +AGGCAGGTCTGATTTCGC |
3/210 | NT | 12.8% | intergenic (+145/+129) | PP_0635/PP_0636 | group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein |
? | NC_002947 | = 1431465 | NA (NA) | intergenic (+74/+78) | PP_1252/PP_1253 | group II intron‑encoding maturase/ArsR family transcriptional regulator |
ACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGC > NC_002947/1431362‑1431609 | aCGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGc < 1:324923/150‑1 (MQ=255) gATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCgg > 1:278010/1‑150 (MQ=255) cctgCTGAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGCGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCAc < 1:485682/147‑1 (MQ=255) gCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAag > 1:378403/1‑150 (MQ=255) ccTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGca > 1:233350/1‑150 (MQ=255) gccgTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATc > 1:472058/1‑150 (MQ=255) ccgTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCa > 2:414033/1‑150 (MQ=255) ggAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGgc > 2:413673/1‑150 (MQ=255) cACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCAc < 1:414033/150‑1 (MQ=255) aCGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACGCCAGCATCCCGGGaaa < 2:378403/150‑1 (MQ=255) cggGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGc > 1:491916/1‑150 (MQ=255) tgtgAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGaa > 1:326144/1‑87 (MQ=255) tgtgAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGaa < 2:326144/87‑1 (MQ=255) tgAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGccc > 2:394402/1‑150 (MQ=255) tCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCa > 2:58880/1‑88 (MQ=255) tCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCa < 1:58880/88‑1 (MQ=255) tCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCa > 2:353022/1‑150 (MQ=255) gATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGc > 2:24803/1‑150 (MQ=255) | ACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGC > NC_002947/1431362‑1431609 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |