New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4586063 =	4 (0.210)	7 (0.540)	7/170	NT	78.9%	intergenic (+102/+115)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586167 =	1 (0.080)					intergenic (+206/+11)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

ATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTGAAGTGTGCGAT  >  NC_002947/4586048‑4586309                                                                                                                        |                                                                                                                                               aTCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTCGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTCTACCCGCGAAGAGGCCGGCCGCGCCAGCACACGCACCCGCAGATGCAGCCg                                                                                                                  <  1:295750/150‑1 (MQ=37)                    ggcctcttcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAt                                                                                               >  1:36946‑M2/101‑150 (MQ=255)                                 GTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAtc                                                                                              <  1:1682‑M1/138‑1 (MQ=255)                                 GTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAtc                                                                                              >  2:1682‑M1/1‑138 (MQ=255)                                   AAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGc                                                                                                                                         >  1:252777‑M1/1‑93 (MQ=255)                                   AAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGc                                                                                                                                         <  2:252777‑M1/93‑1 (MQ=255)                                             ctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGAGGAAGTTCTGCAcc                                                                      >  1:202278‑M2/76‑150 (MQ=255)                                                    gggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGGTGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGcc                                                                 >  1:77116‑M2/69‑148 (MQ=255)                                                    gggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGGTGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGcc                                                                 <  2:77116‑M2/80‑1 (MQ=255)                                                       cagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCacac                                                                                                   <  1:237926‑M2/46‑1 (MQ=255)                                                       cagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCacac                                                                                                   >  2:237926‑M2/66‑111 (MQ=255)                                                                 ttcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCgg                                                  <  2:36946‑M2/95‑1 (MQ=255)                                                                                                                 gccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTGAAGTGTGCGAt  >  1:206334‑M2/8‑150 (MQ=255)                                                                                                                        |                                                                                                                                               ATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTGAAGTGTGCGAT  >  NC_002947/4586048‑4586309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.