New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5382446 =	15 (0.800)	7 (0.520)	6/176	NT	56.7%	intergenic (+18/+115)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	5382544 =	0 (0.000)					intergenic (+116/+17)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR

GCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACAC  >  NC_002947/5382457‑5382659                                                                                        |                                                                                                                    GCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGcttct                                                       <  2:25800‑M1/150‑1 (MQ=255)         GCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTgcgc                                               <  2:333801‑M1/150‑1 (MQ=255)                 ccacaggataggcgccgggcttgaatctggtgccattcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCt                                                               <  1:242108‑M2/55‑1 (MQ=255)                 ccacaggataggcgccgggcttgaatctggtgccattcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCt                                                               >  2:242108‑M2/72‑126 (MQ=255)                 ccacaggataggcgccgggcttgaatctggtgccattcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTgc                                                 <  1:136190‑M2/69‑1 (MQ=255)                 ccacaggataggcgccgggcttgaatctggtgccattcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTgc                                                 >  2:136190‑M2/72‑140 (MQ=255)                 CCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgca                                       >  1:333801‑M1/1‑150 (MQ=255)                   acaggataggcgccgggcttgaatctggtgccattcctgtgggagcggtcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgcagc                                     >  2:425231‑M2/70‑150 (MQ=255)                     AGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAc                                   >  1:25800‑M1/1‑150 (MQ=255)                       gataggcgccgggcttgaatctggtgccattcctgtgggagcgggcttgcccgcgaagaggccggTACTGACAGGAAAAGCCTCAGCGCCAGCTGCGCCGCTCTGGCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATTCAGCAcct                                 >  1:367544‑M2/66‑150 (MQ=255)                        ataggcgccgggcttgaatctggtgcctatcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAcctc                                >  2:101775‑M2/65‑150 (MQ=255)                                                   tATCCTGTGGGAGCGGGCTTGCCCGCGAAGGGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGa     >  1:396016/1‑150 (MQ=255)                                                      cctgtgggagcggtcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGacac  <  1:425231‑M2/116‑1 (MQ=255)                                                                                        |                                                                                                                    GCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACAC  >  NC_002947/5382457‑5382659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.